View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_high_10 (Length: 263)
Name: NF0789_high_10
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 263
Target Start/End: Complemental strand, 4224562 - 4224304
Alignment:
| Q |
5 |
aatagcattcatattagaaggaataatcaacctaggatccaaaacttcactaaatctcatatccttaatcaaaggcaaaacccattttaccaataatcca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4224562 |
aatagcattcatattagaaggaataatcaacctaggatccaaaacttcactaaatctcatatccttaatcaaaggcaaaacccattttaccaataatcca |
4224463 |
T |
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| Q |
105 |
ccttcacaccctcttccacttaagagctccaacaaaatcacccctaacccataaacatcattttccttacaaactctaccacccctaattccttcattcc |
204 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4224462 |
ccttcacaccctcttccacttaaaagctccaacaaaatcacccctaacccataaacatcattttccttacaaacactaccacccctaattccttcattcc |
4224363 |
T |
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| Q |
205 |
aatattcatcatccacataaccaactaaccctctcttttctacaccccccaaaaaacta |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4224362 |
aatattcatcatccacataaccaactaaccctctcttttctacaccccccaaaaaacta |
4224304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 30167098 - 30167040
Alignment:
| Q |
5 |
aatagcattcatattagaaggaataatcaacctaggatccaaaacttcactaaatctca |
63 |
Q |
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|||||| ||||||| | ||||||| |||||||||| |||||||||||||||||||||| |
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| T |
30167098 |
aatagccttcatatcaaaaggaatcatcaacctagattccaaaacttcactaaatctca |
30167040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 30167012 - 30166956
Alignment:
| Q |
116 |
tcttccacttaagagctccaacaaaatcacccctaacccataaacatcattttcctta |
173 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||| || |||||||| |
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| T |
30167012 |
tcttccacttaaaagttccaacaaaatcacccc-aacccataaacaccactttcctta |
30166956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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