View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_high_11 (Length: 259)
Name: NF0789_high_11
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 26 - 259
Target Start/End: Complemental strand, 4224537 - 4224304
Alignment:
| Q |
26 |
atcaacctaggatccaaaacttcactaaatctcatatccttaatcaaaggcaaaacccattttaccaataatccaccttcacaccctcttccacttaaga |
125 |
Q |
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| T |
4224537 |
atcaacctaggatccaaaacttcactaaatctcatatccttaatcaaaggcaaaacccattttaccaataatccaccttcacaccctcttccacttaaaa |
4224438 |
T |
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| Q |
126 |
gctccaacaaaatcacccctaacccataaacatcattttccttacaaactctaccacccctaattccttcattccaatattcatcatccacataaccaac |
225 |
Q |
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| T |
4224437 |
gctccaacaaaatcacccctaacccataaacatcattttccttacaaacactaccacccctaattccttcattccaatattcatcatccacataaccaac |
4224338 |
T |
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| Q |
226 |
taaccctctcttttctacaccccccaaaaaacta |
259 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4224337 |
taaccctctcttttctacaccccccaaaaaacta |
4224304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 30167012 - 30166956
Alignment:
| Q |
112 |
tcttccacttaagagctccaacaaaatcacccctaacccataaacatcattttcctta |
169 |
Q |
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| T |
30167012 |
tcttccacttaaaagttccaacaaaatcacccc-aacccataaacaccactttcctta |
30166956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 30167076 - 30167040
Alignment:
| Q |
23 |
atcatcaacctaggatccaaaacttcactaaatctca |
59 |
Q |
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| T |
30167076 |
atcatcaacctagattccaaaacttcactaaatctca |
30167040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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