View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0789_high_3 (Length: 433)

Name: NF0789_high_3
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0789_high_3
NF0789_high_3
[»] chr1 (8 HSPs)
chr1 (80-404)||(51762843-51763161)
chr1 (83-367)||(51854804-51855084)
chr1 (87-367)||(51858463-51858739)
chr1 (146-356)||(51756727-51756933)
chr1 (153-216)||(51782803-51782866)
chr1 (156-214)||(51407546-51407604)
chr1 (168-216)||(51832377-51832425)
chr1 (158-226)||(51381444-51381512)
[»] chr6 (4 HSPs)
chr6 (83-362)||(4182915-4183190)
chr6 (83-362)||(4743759-4744034)
chr6 (168-208)||(19119075-19119115)
chr6 (168-208)||(19126369-19126409)
[»] chr2 (1 HSPs)
chr2 (6-90)||(4224352-4224436)
[»] chr3 (3 HSPs)
chr3 (168-208)||(23197024-23197064)
chr3 (158-216)||(2492086-2492144)
chr3 (158-216)||(2631361-2631419)
[»] chr4 (1 HSPs)
chr4 (168-217)||(20016184-20016233)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 80 - 404
Target Start/End: Original strand, 51762843 - 51763161
Alignment:
Q  80 aatatacatcagcactcggtcatcttcagatatatataatgccttggttaaggaataaaaaccacaatctcctatttgaggaacacttaacaatttagtc 179  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51762843 aatatacatcagcacttggtcatcttcagatatatataatgccttggttaaggaataaaaaccacgatctcctatttgaggaacacttaacaatttagtc 51762942  T
Q  180 caagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggta 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||| ||||||||||||||||||||      ||    
T  51762943 caagattgtccatttccatattccttcatgatccaaaaataagaaaagctgtcactattagaaaaaaatgcacaaacaatccctcaacaccc------ta 51763036  T
Q  280 attatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagcaagagaaacaataacccaccaaaaaccat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51763037 attatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaaccaagagaaacaataacccaccaaaaaccat 51763136  T
Q  380 gatcgctaaataacaaccaattaac 404  Q
    |||| ||||||||||||||||||||    
T  51763137 gatcactaaataacaaccaattaac 51763161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 83 - 367
Target Start/End: Complemental strand, 51855084 - 51854804
Alignment:
Q  83 atacatcagcactcggtcatcttcagatatatataatgccttggttaaggaataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaa 182  Q
    |||| |||||||| ||||||||||||||||||||||||  |||||  ||  |||| |||||||  |||| ||||||||||||| ||||||||||||||||    
T  51855084 atacgtcagcacttggtcatcttcagatatatataatggtttggtatagatataacaaccacagcctcccatttgaggaacacataacaatttagtccaa 51854985  T
Q  183 gattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaatt 282  Q
    |||| | ||||||||||||| ||||||||||||| || ||||||  |  ||||| |||       ||| ||||||||||||||||||||||||||||       
T  51854984 gattctacatttccatattctttcatgatccaaacatcagaaaacttctcactactag-aaaaagtgcacaaacaatccctcaacacccccaaggta--- 51854889  T
Q  283 atgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagcaagagaaacaataaccc 367  Q
    |||| |||| |||||| ||| |||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||| ||||    
T  51854888 atgcgatttgcaggttcgtagtcataaagagggtgagaaaactcttgatacaacccattctccaaatcaagagaaacaatgaccc 51854804  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 87 - 367
Target Start/End: Complemental strand, 51858739 - 51858463
Alignment:
Q  87 atcagcactcggtcatcttcagatatatataatgccttggttaaggaataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaagatt 186  Q
    ||||||| | || |||||||||||||||||||| | |||||  ||  |||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  51858739 atcagcattaggccatcttcagatatatataatactttggtatagatataacaaccacaacctcccatttgaggaacacttaacaatttagtccaagatt 51858640  T
Q  187 gtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgc 286  Q
     | ||||||||||||||||||||||||||| || ||||||  || |||||| ||       ||| ||| |||||||||| ||||||||||| |   ||||    
T  51858639 ctacatttccatattccttcatgatccaaacatcagaaaacttgtcactatgag-aaaaaatgcacaagcaatccctcagcacccccaaggca---atgc 51858544  T
Q  287 catttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagcaagagaaacaataaccc 367  Q
     | ||||||||| ||||| |||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  51858543 aagttccaggtttgtaattataaagagggtgaaaaagctcttgacacaactcattctccaaatcaagagaaacaatgaccc 51858463  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 356
Target Start/End: Original strand, 51756727 - 51756933
Alignment:
Q  146 atctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnn 245  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||  || |||| | ||         
T  51756727 atctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactttgag-aaaa 51756825  T
Q  246 nntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctcc 345  Q
      ||| |||||||||||||||||||||||||   || |||  |||| |  |||||| |||| || |||||||  ||||||||||| ||||||| ||||||    
T  51756826 aatgcacaaacaatccctcaacacccccaag---ataatgtaattttcttgttggttatcacaaagagggtgcaaaagctcttgagacaactccttctcc 51756922  T
Q  346 aaagcaagaga 356  Q
    ||| |||||||    
T  51756923 aaatcaagaga 51756933  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 51782866 - 51782803
Alignment:
Q  153 atttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 216  Q
    |||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||    
T  51782866 attttaggaacacttaataatttattccaagattgttcatttccatattccttcataatccaaa 51782803  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 51407546 - 51407604
Alignment:
Q  156 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 214  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  51407546 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 51832425 - 51832377
Alignment:
Q  168 aacaatttagtccaagattgtccatttccatattccttcatgatccaaa 216  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctttcattatccaaa 51832377  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 51381444 - 51381512
Alignment:
Q  158 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaa 226  Q
    ||||| ||| ||||||||||||||||| | | ||||||||||||| ||||| ||||||| || ||||||    
T  51381444 aggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatcagaaaa 51381512  T

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Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 83 - 362
Target Start/End: Original strand, 4182915 - 4183190
Alignment:
Q  83 atacatcagcactcggtcatcttcagatatatataatgccttggttaaggaataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaa 182  Q
    ||||||||||||| ||||||  ||||| ||||||||||  || ||||||  ||| | |  |  |||||| ||||||||||||||||||||||||||||||    
T  4182915 atacatcagcacttggtcatgctcagaaatatataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaa 4183014  T
Q  183 gattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaatt 282  Q
    |||||||||||||||||||||||||||||||||| || | ||||  || |||||||||       ||| ||||||||||||||||| ||||||||||       
T  4183015 gattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattag-aaaaaatgcacaaacaatccctcaacatccccaaggta--- 4183110  T
Q  283 atgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagcaagagaaacaat 362  Q
     || || || ||| ||||  ||||||| ||||||||||||||||||||||  |||| |||| ||||  ||||||||||||    
T  4183111 ttgtcagtttcagattggatatcataaagagggtgagaaagctcttgataagactccttctgcaaatgaagagaaacaat 4183190  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 83 - 362
Target Start/End: Original strand, 4743759 - 4744034
Alignment:
Q  83 atacatcagcactcggtcatcttcagatatatataatgccttggttaaggaataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaa 182  Q
    ||||||||||||| ||||||  ||||| ||||||||||  || ||||||  ||| | |  |  |||||| ||||||||||||||||||||||||||||||    
T  4743759 atacatcagcacttggtcatgctcagaaatatataatggtttagttaagatatatatataagcatctcccatttgaggaacacttaacaatttagtccaa 4743858  T
Q  183 gattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaatt 282  Q
    |||||||||||||||||||||||||||||||||| || | ||||  || |||||||||       ||| ||||||||||||||||||||||||||||       
T  4743859 gattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattag-aaaaaatgcacaaacaatccctcaacacccccaaggta--- 4743954  T
Q  283 atgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctccaaagcaagagaaacaat 362  Q
     ||  | || ||| ||||  ||||||| |||||||||||| |||||||||  |||| |||| ||||  ||||||||||||    
T  4743955 ttgtaagtttcagattggatatcataaagagggtgagaaaactcttgataagactccttctgcaaatgaagagaaacaat 4744034  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 19119115 - 19119075
Alignment:
Q  168 aacaatttagtccaagattgtccatttccatattccttcat 208  Q
    ||||||||||||||||| | | |||||||||||||||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcat 19119075  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 19126409 - 19126369
Alignment:
Q  168 aacaatttagtccaagattgtccatttccatattccttcat 208  Q
    ||||||||||||||||| | | |||||||||||||||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcat 19126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 4224436 - 4224352
Alignment:
Q  6 ctccaacaatatcacccctaacccataaacatcattttccttacaaactctaccacccctaattccttcattccaatatacatca 90  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  4224436 ctccaacaaaatcacccctaacccataaacatcattttccttacaaacactaccacccctaattccttcattccaatattcatca 4224352  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 23197064 - 23197024
Alignment:
Q  168 aacaatttagtccaagattgtccatttccatattccttcat 208  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcat 23197024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 2492144 - 2492086
Alignment:
Q  158 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 216  Q
    |||||||||  |||||||||||||||| | || ||||||||| |||||||| |||||||    
T  2492144 aggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaa 2492086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 2631419 - 2631361
Alignment:
Q  158 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 216  Q
    |||||||||  |||||||||||||||| | |  |||||||||||||||||| |||||||    
T  2631419 aggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaa 2631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 20016184 - 20016233
Alignment:
Q  168 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaa 217  Q
    ||||||||||||||||| | |  | |||||||||||||||||||||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaaa 20016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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