View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_high_9 (Length: 308)
Name: NF0789_high_9
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 31 - 305
Target Start/End: Complemental strand, 13952415 - 13952145
Alignment:
| Q |
31 |
aacgaatcttgcattattatttgcttgcccagacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagtatatattttgcattg |
130 |
Q |
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| T |
13952415 |
aacgaatcttgcattattatttgcttgcccggacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagtatatattttgcattg |
13952316 |
T |
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| Q |
131 |
tcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcccttccataatttta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13952315 |
tcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcccttccataatttta |
13952216 |
T |
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| Q |
231 |
aagatggtgacaaagtggactcacatagtcatgagtcatgtatcctatactagcggtaataatattcttcgacat |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |
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| T |
13952215 |
aagatggtgacaaggtggactcacatagtcatgagtcac----cctatactagcggtaataataatgttcgacat |
13952145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 31 - 305
Target Start/End: Complemental strand, 14093622 - 14093352
Alignment:
| Q |
31 |
aacgaatcttgcattattatttgcttgcccagacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagtatatattttgcattg |
130 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14093622 |
aacgaatcttgcattattatttgcttgcccggacaaatattcctttaaatgttggtcacacaaaactcaaccaataatgacgagtatatattttgcattg |
14093523 |
T |
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| Q |
131 |
tcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcccttccataatttta |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14093522 |
tcgttttggttaaaaacaatgttcaatttcccaataccaaggaggaagggtgatgctcttatttgtaaaaaccaccaccacaatcccttccataatttta |
14093423 |
T |
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| Q |
231 |
aagatggtgacaaagtggactcacatagtcatgagtcatgtatcctatactagcggtaataatattcttcgacat |
305 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |
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| T |
14093422 |
aagatggtgacaaggtggactcacatagtcatgagtcac----cctatactagcggtaataataatgttcgacat |
14093352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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