View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_low_1 (Length: 660)
Name: NF0789_low_1
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 27 - 427
Target Start/End: Complemental strand, 33206858 - 33206460
Alignment:
| Q |
27 |
tcactaagggcatgccaagtgatgaaagtttgcataaaaaa-gctagaagacactttacaagtctataaaccaagtcctccaagtccatcaacatcaagc |
125 |
Q |
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| T |
33206858 |
tcactaagggcatgccaagtgatgaaagtttgcataaaaaaagctagaagacactttacaagtctacaaaccaagtcctccaagtccatcaacatcaagc |
33206759 |
T |
|
| Q |
126 |
aatcttaaattacaaaatatattacccgaaagcaataataaaaacaagcatactacatcacctacggctacatatatacacctatccaacattactcann |
225 |
Q |
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| T |
33206758 |
aatcttaaattacaaaatatatcacccgaaagcaataataaaaacaagcatactacatcacctacagctacatatatacacctattca---ttactcatt |
33206662 |
T |
|
| Q |
226 |
nnnnnaaattgatttagatgtttatcaaggattttatatatgtattgaattattatgagtaacgcataaaatcaaagttggagactatatctgtcttaag |
325 |
Q |
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| T |
33206661 |
tttttaaattgatttagatgtttaccaaggattttatatatgtattgaattattatgagtaacgcataaaatcaaagttggagactatatctgtcttaag |
33206562 |
T |
|
| Q |
326 |
aaaatatataactttcatttgttttttggacaaattataacattcattcttttaaattgattacaactatcttgattcttttaaattgatttctctaaat |
425 |
Q |
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| T |
33206561 |
aaaatatataacattcatttgttttttggacaaattataacattcattcttttaaattgattacaactatcttgattcttttaaattgatttctctaaat |
33206462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 447 - 564
Target Start/End: Complemental strand, 33206466 - 33206349
Alignment:
| Q |
447 |
taaatgaccacctcatcaattgatccgaattgaccaagaaggttggccgtactggagcaatgttctgttgaggttgaaagtagagggtggcaccttgtcg |
546 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
33206466 |
taaatgaccacctcatcaattgatccgaattgacaaagaaggttggccgtaccggagcaatgttccgttgaggttgaaagtagagggtggcaccttgttg |
33206367 |
T |
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| Q |
547 |
ataaccttgtgtactttc |
564 |
Q |
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|||||||||||||||||| |
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| T |
33206366 |
ataaccttgtgtactttc |
33206349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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