View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_low_11 (Length: 315)
Name: NF0789_low_11
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 35351362 - 35351663
Alignment:
| Q |
14 |
agggtgaggaggtataaaagtgatgagagagaaaggtagtgtgagaaaatcagatttgtaaattcaattatttgcttaaattgaatatcagaagtgatgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351362 |
agggtgaggaggtataaaagtgatgagagagaaaggtagtgtgagaaaatcagatttgtaaattcaattatttgcttaaattgaatatcagaagtgatgt |
35351461 |
T |
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| Q |
114 |
ttaaggaaaaactttttatttttatataggatgtgactatttcagcaaaaccaaatagcaacatattattcttagtggcatagttatcattgtacatgtg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35351462 |
ttaaggaaaaactttttatttttatataggatgtgactatttcagcaaaaccaaatagcaacatattattcttagtggcatagttatcattgtgcatgtg |
35351561 |
T |
|
| Q |
214 |
catattactttacatgcatctcatcacactcacacatcgtagaaaaaatggttatctgctctgcatgttgacctttgttttttcatatcttttccttgac |
313 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35351562 |
catattattttacatgcatctcatcacattcacacatcgtagaaaaaatggttatctgctctgcatgctgacctttgttttttcatatcttttccttgac |
35351661 |
T |
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| Q |
314 |
aa |
315 |
Q |
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|| |
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| T |
35351662 |
aa |
35351663 |
T |
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