View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0789_low_2 (Length: 544)

Name: NF0789_low_2
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0789_low_2
NF0789_low_2
[»] chr8 (13 HSPs)
chr8 (30-542)||(5920291-5920797)
chr8 (106-472)||(5983554-5983911)
chr8 (55-472)||(5958982-5959393)
chr8 (164-472)||(5948002-5948298)
chr8 (234-472)||(5886717-5886949)
chr8 (164-492)||(5842349-5842671)
chr8 (164-492)||(5849059-5849381)
chr8 (148-223)||(5841883-5841958)
chr8 (148-223)||(5848593-5848668)
chr8 (148-223)||(5886202-5886277)
chr8 (30-87)||(5842224-5842281)
chr8 (30-87)||(5848934-5848991)
chr8 (30-87)||(5886525-5886582)
[»] chr2 (1 HSPs)
chr2 (382-471)||(42788746-42788835)
[»] chr1 (2 HSPs)
chr1 (512-544)||(28108212-28108244)
chr1 (382-466)||(51044664-51044748)
[»] chr5 (1 HSPs)
chr5 (398-438)||(34067099-34067139)
[»] chr3 (1 HSPs)
chr3 (382-466)||(34626432-34626516)


Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 30 - 542
Target Start/End: Original strand, 5920291 - 5920797
Alignment:
Q  30 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggtattggattttgaatgtgaac 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5920291 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggtattggattttgaatgtgaag 5920390  T
Q  130 caaattgccattataatcataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcat 229  Q
     |||||||||||||||      ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920391 gaaattgccattataa------tggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcat 5920484  T
Q  230 agttgatcttcatggtgatggttgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtaggggg 329  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5920485 agttgatcttcatggtgatggttgaaatttagaatcacattagggtttgcatttatagggagtaaactttccatagaaccaatatttttattgtaggggg 5920584  T
Q  330 tgtgaatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgt 429  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920585 tgtgaatattagaaaatgtggggaaagatggaaagataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgt 5920684  T
Q  430 tcttccaggtaagtgcttggcaatctgagcccacctgtccaaacaaatttaaatctttttgagagaagtactggaaacatttgaaaattgttgttcacac 529  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5920685 tcttccaggtaagtgcttcgcaatctgagcccacctgtccaaacaaatttaaatctttttgagagaattactggaaacatttgaaaattgttgttcacac 5920784  T
Q  530 ttctaacaaggct 542  Q
    |||||||||||||    
T  5920785 ttctaacaaggct 5920797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 106 - 472
Target Start/End: Original strand, 5983554 - 5983911
Alignment:
Q  106 tggtattggattttgaatgtgaaccaaattgccattataatcataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtaga 205  Q
    ||||||||||||||||||||||   |||||| |||||||||      ||| ||||||   ||||||||||||||||||||| ||||||||||||||||||    
T  5983554 tggtattggattttgaatgtgagggaaattggcattataat------ggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtaga 5983644  T
Q  206 tttggagatgaggttggatagcatagttgatcttcatggtgat---ggttgaagtttagaatcacattagggtttgcatttatagggagtatactttcca 302  Q
    |||||||||||||||| || | |||| | ||||| ||||| ||   | |||||||| || |||||||||||||||||||||| ||||| |    ||||||    
T  5983645 tttggagatgaggttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacattagggtttgcatttaaagggaatgagttttcca 5983744  T
Q  303 tagaaccaatatttttattgtagggggtgtgaatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaatt 402  Q
    | |||||||||||   || ||||||||||||||| | |||||||||||||||||||||||| ||| ||||| || ||||||||||||| |||||||||||    
T  5983745 ttgaaccaatatt---atggtagggggtgtgaatttcagaaaatgtggtgaaagatggaataatatcatgacaaaggattttcttctttatggttgaatt 5983841  T
Q  403 ccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctgtccaaa 472  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  5983842 ccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaaa 5983911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 55 - 472
Target Start/End: Original strand, 5958982 - 5959393
Alignment:
Q  55 tgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggt---attggattttgaatgtgaaccaaattgccattataatcataa 151  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||  || | | ||   || ||||||||||||||||  |||||| |||||||||         
T  5958982 tgaccatgtatcttcataagtagaaagattagatattggttgtacaatattttgtgccatcggattttgaatgtgaaggaaattggcattataat----- 5959076  T
Q  152 tggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatggt 251  Q
     ||| ||||||   ||||||||||||||||||||| |||||||||| |||  |||||||||||||||||| || | |||| | ||||| ||||||||| |    
T  5959077 -ggtcattgat---gtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttgaatggtataggtaatcttgatggtgatgat 5959172  T
Q  252 ---tgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattagaaaatgt 348  Q
       ||||||| ||  ||||||| ||||||||||||| |||||      ||||||| |||||| ||||   || ||| |||||||||| || |||||||||    
T  5959173 gattgaagttgagggtcacattcgggtttgcatttaaagggaaggagttttccattgaaccagtatt---atggtatggggtgtgaacatcagaaaatgt 5959269  T
Q  349 ggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttg 448  Q
    | ||||||||||| | ||| | |||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||     
T  5959270 gatgaaagatggagtaatatcgtgagaatgaattttcttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgtttt 5959369  T
Q  449 gcaatctgagcccacctgtccaaa 472  Q
    |||||||||||||| |||||||||    
T  5959370 gcaatctgagcccatctgtccaaa 5959393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 164 - 472
Target Start/End: Original strand, 5948002 - 5948298
Alignment:
Q  164 atgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgat---ggttgaagttta 260  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |||| | ||||| ||||| ||   | |||||||| |    
T  5948002 atgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggtaatcttgatggttataatgattgaagttga 5948101  T
Q  261 gaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattagaaaatgtggtgaaagatgg 360  Q
    | |||||||||||||||||||||| ||||| |    ||||||| ||||||||||| |          |||      || |||||||||||||||||||||    
T  5948102 ggatcacattagggtttgcatttaaagggaatgagttttccattgaaccaatattat----------ggtc-----atcagaaaatgtggtgaaagatgg 5948186  T
Q  361 aattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcc 460  Q
    ||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||    
T  5948187 aataataccatgagaaaggatttttttctttatggttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcc 5948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 234 - 472
Target Start/End: Original strand, 5886717 - 5886949
Alignment:
Q  234 gatcttcatggtgatggttgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtg 333  Q
    |||||| ||||| | | ||||||||||| |||||||||||||||||||||| ||| |  | ||||| | |||||||  ||||      ||||||| ||||    
T  5886717 gatcttgatggtaaggattgaagtttaggatcacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtatt------gtaggggatgtg 5886810  T
Q  334 aatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttctt 433  Q
    ||||| | |||||| ||||||||||||||   || ||| ||||  || ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5886811 aatatcataaaatggggtgaaagatggaacattatcataagaaatgagttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttctt 5886910  T
Q  434 ccaggtaagtgcttggcaatctgagcccacctgtccaaa 472  Q
    || ||||||||||| ||||| || ||||| |||||||||    
T  5886911 cctggtaagtgcttagcaatttgtgcccatctgtccaaa 5886949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 164 - 492
Target Start/End: Original strand, 5842349 - 5842671
Alignment:
Q  164 atgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatggttgaagtttagaa 263  Q
    ||||||||| ||||| || |||||||||||   | ||| | ||||||||| ||| ||| |  | |||| ||||||| ||||||| | ||||||||||| |    
T  5842349 atgtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaagtttagca 5842445  T
Q  264 tcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattag---aaaatgtggtgaaagatgg 360  Q
    ||||||||||||||||||||| ||| |  | | ||||| || |||||      | | |||||| |  |||||||| |    |||||| |||||| |||||    
T  5842446 tcacattagggtttgcatttaaaggaaaaaaagtttccttaaaacca------tcactgtaggagaggtgaatatcatcataaaatggggtgaaggatgg 5842539  T
Q  361 aattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcc 460  Q
    ||  ||| ||| |||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||| ||||||||| || |||    
T  5842540 aacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtgcc 5842639  T
Q  461 cacctgtccaaacaaatttaaatctttttgag 492  Q
    || |||||||||||| |||||| ||| |||||    
T  5842640 catctgtccaaacaagtttaaaccttgttgag 5842671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 164 - 492
Target Start/End: Original strand, 5849059 - 5849381
Alignment:
Q  164 atgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatggttgaagtttagaa 263  Q
    ||||||||| ||||| || |||||||||||   | ||| | ||||||||| ||| ||| |  | |||| ||||||| ||||||| | ||||||||||| |    
T  5849059 atgtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaagtttagca 5849155  T
Q  264 tcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattag---aaaatgtggtgaaagatgg 360  Q
    ||||||||||||||||||||| ||| |  | | ||||| || |||||      | | |||||| |  |||||||| |    |||||| |||||| |||||    
T  5849156 tcacattagggtttgcatttaaaggaaaaaaagtttccttaaaacca------tcactgtaggagaggtgaatatcatcataaaatggggtgaaggatgg 5849249  T
Q  361 aattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcc 460  Q
    ||  ||| ||| |||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||| ||| || |||    
T  5849250 aacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgcttggtaatttgtgcc 5849349  T
Q  461 cacctgtccaaacaaatttaaatctttttgag 492  Q
    || |||||||||||| |||||| ||| |||||    
T  5849350 catctgtccaaacaagtttaaaccttgttgag 5849381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 5841883 - 5841958
Alignment:
Q  148 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 223  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5841883 ataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttgga 5841958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 5848593 - 5848668
Alignment:
Q  148 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 223  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5848593 ataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttgga 5848668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 5886202 - 5886277
Alignment:
Q  148 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 223  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  5886202 ataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttgga 5886277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 5842224 - 5842281
Alignment:
Q  30 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattaga 87  Q
    |||||| ||||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  5842224 tgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga 5842281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 5848934 - 5848991
Alignment:
Q  30 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattaga 87  Q
    |||||| ||||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  5848934 tgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga 5848991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 5886525 - 5886582
Alignment:
Q  30 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattaga 87  Q
    |||||| ||||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  5886525 tgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga 5886582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 42788746 - 42788835
Alignment:
Q  382 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctgtccaa 471  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  42788746 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 42788835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 544
Target Start/End: Complemental strand, 28108244 - 28108212
Alignment:
Q  512 gaaaattgttgttcacacttctaacaaggctga 544  Q
    |||||||||||||||||||||||||||||||||    
T  28108244 gaaaattgttgttcacacttctaacaaggctga 28108212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 466
Target Start/End: Complemental strand, 51044748 - 51044664
Alignment:
Q  382 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctg 466  Q
    |||||||||||   ||||||||||||||||||| | ||||||||||||||| || ||||| ||    ||||| ||||||||||||    
T  51044748 tttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctg 51044664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 438
Target Start/End: Original strand, 34067099 - 34067139
Alignment:
Q  398 gaattccaaaagtttttcacctcattatctgttcttccagg 438  Q
    ||||||||| |||||||||||||||||||||| | ||||||    
T  34067099 gaattccaatagtttttcacctcattatctgtacgtccagg 34067139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 466
Target Start/End: Original strand, 34626432 - 34626516
Alignment:
Q  382 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctg 466  Q
    |||||||||||   ||||||||||||||||||| | ||||||||| ||||| || ||||| ||    ||||| ||||||||||||    
T  34626432 tttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgctgcaatttgagcccacctg 34626516  T

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