View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_low_20 (Length: 251)
Name: NF0789_low_20
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 23231537 - 23231333
Alignment:
| Q |
1 |
ttgcttaatgtctttgaggagaaagaccttgaagtcaattttactagaagtcatatcaaatcattgatcttggtacatatacatcttctcatcatgttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23231537 |
ttgcttaatgtctttgaggagaaagaccttgaagtcaattttactagaagtcatatcaaatcattgatcttggtacatatacatcttctcctcatgttta |
23231438 |
T |
|
| Q |
101 |
ttatgtttttatatggtcacaactacaaatccaactcatttttagaaatacacacaaaaatacacttaaaccaatattttcaataataataacaacaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23231437 |
ttatgtttttatatggtcacaactacaaatccaactcatttttagaaatacacacaaaaatacacttaaaccaatattttcaataataataacaacaata |
23231338 |
T |
|
| Q |
201 |
actaa |
205 |
Q |
| |
|
||||| |
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|
| T |
23231337 |
actaa |
23231333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 48602508 - 48602564
Alignment:
| Q |
19 |
gagaaagaccttgaagtcaattttactagaagtcatatcaaatcattgatcttggta |
75 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||||||||||||||| || |||||| |
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|
| T |
48602508 |
gagaaagaccgtgaagtcaactttactagaaatcatatcaaatcattaatattggta |
48602564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 48592824 - 48592889
Alignment:
| Q |
30 |
tgaagtcaattttactagaagtcatatcaaatcattgatcttggtacatatacatcttctcatcat |
95 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||| || ||||||| |||| | |||||| |||| |
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|
| T |
48592824 |
tgaagtcaactttactagaaatcatatcaaatcattaatattggtacgtatataacttctcctcat |
48592889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 39413498 - 39413453
Alignment:
| Q |
150 |
acacacaaaaatacacttaaaccaatattttcaataataataacaa |
195 |
Q |
| |
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|||||||| ||||||| | ||||||| ||||||||||||||||||| |
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|
| T |
39413498 |
acacacaacaatacacattaaccaatgttttcaataataataacaa |
39413453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 29139539 - 29139494
Alignment:
| Q |
150 |
acacacaaaaatacacttaaaccaatattttcaataataataacaa |
195 |
Q |
| |
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|||||||| ||||||| | ||| ||||||||||||||||||||||| |
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|
| T |
29139539 |
acacacaacaatacacattaactaatattttcaataataataacaa |
29139494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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