View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0789_low_21 (Length: 251)
Name: NF0789_low_21
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 23231775 - 23231590
Alignment:
| Q |
30 |
tttggttcgcgaggtaacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaaggttttnnnnnnngggcc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23231775 |
tttggttcgcgaggtaacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaaggttttaaaaaaagggcc |
23231676 |
T |
|
| Q |
130 |
ttggacatacacaagaggtatgatgctttgttggagaagataatttccgatcgggaggaatcaagaaggaaagccaaggtaataga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||| ||||||| |||||||| ||||||| |
|
|
| T |
23231675 |
ttggacatacacaagaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
23231590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 23224441 - 23224263
Alignment:
| Q |
31 |
ttggttcgcgaggtaacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaaggttttnnnnnnngggcct |
130 |
Q |
| |
|
|||||||| || || || |||||||| || |||||||| ||||||||||||||||||||| ||||||||| ||||| |||||| | |||| | |
|
|
| T |
23224441 |
ttggttcgagatgtgacccaaattttcggggaatttaacatttcggattttataggattttgcaagaacttggactttcaaggtctcaaaaagagggcat |
23224342 |
T |
|
| Q |
131 |
tggacatacacaagaggtatgatgctttgttggagaagataatttccgatcgggaggaatcaagaaggaaagccaaggt |
209 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||| |||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
23224341 |
tggatatacataagaggtatgatgcttttctggagaagttaatttgtgatcgtgaggaatcacgaaggaaagccaaggt |
23224263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 48592557 - 48592742
Alignment:
| Q |
30 |
tttggttcgcgaggtaacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaaggttttnnnnnnngggcc |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48592557 |
tttggttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggcc |
48592656 |
T |
|
| Q |
130 |
ttggacatacacaagaggtatgatgctttgttggagaagataatttccgatcgggaggaatcaagaaggaaagccaaggtaataga |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| ||||||| |||||||| ||||||| |
|
|
| T |
48592657 |
ttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
48592742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 48602252 - 48602437
Alignment:
| Q |
30 |
tttggttcgcgaggtaacacaaatttttggagaatttaatgtttcggattttataggatttttcaagaactttgacttgcaaggttttnnnnnnngggcc |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
48602252 |
tttggttcgcgaggtaacacagatttttggagaatttaatgtttcagattttataggaattttcaagaactttgacttgcaaggttttaaaaagagggcc |
48602351 |
T |
|
| Q |
130 |
ttggacatacacaagaggtatgatgctttgttggagaagataatttccgatcgggaggaatcaagaaggaaagccaaggtaataga |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| || ||| ||||||| |||||||| ||||||| |
|
|
| T |
48602352 |
ttggacatacacaaaaggtatgatgctttgttggataagattatttctgatcgtgaagaactaagaagggaagccaagctaataga |
48602437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6764 times since January 2019
Visitors: 5771