View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_low_23 (Length: 231)
Name: NF0789_low_23
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_23 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 1739114 - 1738991
Alignment:
| Q |
108 |
catgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaa |
207 |
Q |
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| T |
1739114 |
catgaattgaacttgtttacagatataataatagaaaaagtttaggaggaatagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaa |
1739015 |
T |
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| Q |
208 |
ctattacaaggcagcttatgatgt |
231 |
Q |
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| T |
1739014 |
ctattacaagttagcttatgatgt |
1738991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 1717617 - 1717494
Alignment:
| Q |
108 |
catgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaa |
207 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||| |
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| T |
1717617 |
catgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaa |
1717518 |
T |
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| Q |
208 |
ctattacaaggcagcttatgatgt |
231 |
Q |
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| T |
1717517 |
ctattacagggaagcttatgatgt |
1717494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 1748967 - 1748847
Alignment:
| Q |
110 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
209 |
Q |
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| T |
1748967 |
tgaattgaatttgtggacaggtatggtaataaaccaagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagt |
1748868 |
T |
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| Q |
210 |
attacaaggcagcttatgatg |
230 |
Q |
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||||||||||||||||||||| |
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| T |
1748867 |
attacaaggcagcttatgatg |
1748847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 1754283 - 1754163
Alignment:
| Q |
110 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
209 |
Q |
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||||||||| |||| |||| ||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
1754283 |
tgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatctagatagcctcaagaaat |
1754184 |
T |
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| Q |
210 |
attacaaggcagcttatgatg |
230 |
Q |
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||||||||| |||||||||| |
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| T |
1754183 |
attacaaggaggcttatgatg |
1754163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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