View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0789_low_28 (Length: 213)
Name: NF0789_low_28
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 4224425 - 4224250
Alignment:
| Q |
18 |
tcacccctaacccataaacatcattttccttacaaactctaccacccctaattccttcattccaatattcatcatccacataaccaactaaccctctctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4224425 |
tcacccctaacccataaacatcattttccttacaaacactaccacccctaattccttcattccaatattcatcatccacataaccaactaaccctctctt |
4224326 |
T |
|
| Q |
118 |
ttctacaccccccaaaaaactaagtccataatcagatattttagcacaaaaattaacatcaataagaacattagaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4224325 |
ttctacaccccccaaaaaactaagtccataatcagatattttagcacaaaaattaacatcaataagaacattagaa |
4224250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6319 times since January 2019
Visitors: 5767