View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0789_low_3 (Length: 502)

Name: NF0789_low_3
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0789_low_3
NF0789_low_3
[»] chr8 (2 HSPs)
chr8 (380-497)||(6379454-6379575)
chr8 (380-497)||(6384145-6384266)
[»] chr2 (3 HSPs)
chr2 (380-497)||(1617486-1617607)
chr2 (380-497)||(1622178-1622299)
chr2 (7-91)||(4224351-4224435)
[»] chr3 (2 HSPs)
chr3 (380-497)||(42574086-42574207)
chr3 (377-453)||(42573223-42573303)
[»] chr6 (2 HSPs)
chr6 (225-379)||(444783-444922)
chr6 (196-234)||(444717-444755)
[»] chr4 (2 HSPs)
chr4 (190-234)||(56477701-56477745)
chr4 (85-130)||(56477596-56477640)
[»] chr1 (1 HSPs)
chr1 (190-234)||(23262201-23262245)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 380 - 497
Target Start/End: Original strand, 6379454 - 6379575
Alignment:
Q  380 taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg 475  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||    |||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  6379454 taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg 6379553  T
Q  476 ccttatctagtttattgtattt 497  Q
    |||||| |||||||||||||||    
T  6379554 ccttatatagtttattgtattt 6379575  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 380 - 497
Target Start/End: Original strand, 6384145 - 6384266
Alignment:
Q  380 taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg 475  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||    |||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  6384145 taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg 6384244  T
Q  476 ccttatctagtttattgtattt 497  Q
    |||||| |||||||||||||||    
T  6384245 ccttatatagtttattgtattt 6384266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 380 - 497
Target Start/End: Complemental strand, 1617607 - 1617486
Alignment:
Q  380 taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg 475  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||    |||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  1617607 taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg 1617508  T
Q  476 ccttatctagtttattgtattt 497  Q
    |||||| |||||||||||||||    
T  1617507 ccttatatagtttattgtattt 1617486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 380 - 497
Target Start/End: Complemental strand, 1622299 - 1622178
Alignment:
Q  380 taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg 475  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||    |||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  1622299 taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagcagatcagagtttgacttcatataaccctctttctgtacatattg 1622200  T
Q  476 ccttatctagtttattgtattt 497  Q
    |||||| |||||||||||||||    
T  1622199 ccttatatagtttattgtattt 1622178  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 4224435 - 4224351
Alignment:
Q  7 tccaataatatcacccctaacccataaacatcattttccttacaaactctaccacccctaattccttcattccaatattcatcat 91  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4224435 tccaacaaaatcacccctaacccataaacatcattttccttacaaacactaccacccctaattccttcattccaatattcatcat 4224351  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 380 - 497
Target Start/End: Original strand, 42574086 - 42574207
Alignment:
Q  380 taaaagagaatcacatcattttagcatattctgttttagtatgattaa----tagcagatcatagtttgacttcatataatcctctttttgtacatattg 475  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||||    ||| |||||| ||||||||||||||||| ||||||| |||||||||||    
T  42574086 taaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagaagatcagagtttgacttcatataaccctctttctgtacatattg 42574185  T
Q  476 ccttatctagtttattgtattt 497  Q
    |||||| |||||||||||||||    
T  42574186 ccttatatagtttattgtattt 42574207  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 377 - 453
Target Start/End: Original strand, 42573223 - 42573303
Alignment:
Q  377 aactaaaagagaatcacatcattttagcatattctgttttagtatgatta----atagcagatcatagtttgacttcatat 453  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||| |||    |||| |||||| |||||||||||||||    
T  42573223 aactaaaagagaatcacatcattttagcagattctgatttagtatgtttaagagatagaagatcagagtttgacttcatat 42573303  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 379
Target Start/End: Original strand, 444783 - 444922
Alignment:
Q  225 acactaccaaataaactgcaacattatgaacatttacaccagacatactgcaaacacaaatgtacacacaataaagagactaattcgcattgttttacat 324  Q
    |||||||||| |||||| ||| |||||||||||| ||||||||| || |||||||| | ||||||| ||||||||| |||||||  |||| |||||        
T  444783 acactaccaagtaaactccaagattatgaacatt-acaccagacctattgcaaacagatatgtacatacaataaagggactaatctgcatggtttt---- 444877  T
Q  325 acaaataaagacataagaaatatcttttcacaaccggcaagcaatggttgataac 379  Q
              ||||||||||||| |||||||||||||||||||||||||||||||    
T  444878 ----------acataagaaatattttttcacaaccggcaagcaatggttgataac 444922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 444717 - 444755
Alignment:
Q  196 aaatcatttgttacatatggggatgtcatacactaccaa 234  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  444717 aaatcatttgttacatatgaggatgtcatacactaccaa 444755  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 56477701 - 56477745
Alignment:
Q  190 gagaccaaatcatttgttacatatggggatgtcatacactaccaa 234  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  56477701 gagactaaatcatttgttacatatgaggatgtcatacactaccaa 56477745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 56477596 - 56477640
Alignment:
Q  85 tcatcatacaatcaaataaataaaaaatcaacataagcaaacaccc 130  Q
    ||||||| |||||||||||| |||||||||| ||||||||||||||    
T  56477596 tcatcatgcaatcaaataaa-aaaaaatcaatataagcaaacaccc 56477640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 23262245 - 23262201
Alignment:
Q  190 gagaccaaatcatttgttacatatggggatgtcatacactaccaa 234  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||    
T  23262245 gagactaaatcatttgttacatatgaggatgtcatacactaccaa 23262201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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