View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0789_low_8 (Length: 380)
Name: NF0789_low_8
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_8 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 36398481 - 36398818
Alignment:
| Q |
30 |
gcaacatccttctagtgttgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagat |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36398481 |
gcaacatccttctagtgttgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagat |
36398580 |
T |
|
| Q |
130 |
tgtccaaagaatcaggtcaaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||| |
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| T |
36398581 |
tgtccaaagaatcaggtcaaggcaaagtagagtttaaaaatgaaattacacttttagttaagctccagcacagaaatctagtaaggttgcttggttgttg |
36398680 |
T |
|
| Q |
230 |
ctttgaaaaagaagaaaggatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatgtgtctctctgactcactcattgtc |
329 |
Q |
| |
|
||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36398681 |
cttcgaaaaagaagaaagaatgctagtttatgaatacctaccaaacaaaagcctagacttctttatattcggta--tgtctctctgactcactcattgtc |
36398778 |
T |
|
| Q |
330 |
tctctagcttgaataaacttgtgtttagcgtatccttcat |
369 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
36398779 |
tctctagcttgaataaacctgtgtttagcgtatacttcat |
36398818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 48 - 351
Target Start/End: Original strand, 36406270 - 36406573
Alignment:
| Q |
48 |
tgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtc |
147 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| || |||| |
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| T |
36406270 |
tgcaaaaataatgaaatatgatttaagagataaatatttcagggttgcttggttaatggacaagagattgcagttaaaagattgtccagagattctggtc |
36406369 |
T |
|
| Q |
148 |
aaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36406370 |
aaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
36406469 |
T |
|
| Q |
248 |
gatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatgtgtctctctgactcactcattgtctctctagcttgaataaac |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||| |
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| T |
36406470 |
gatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatgtctctctctgactcactcattgtctttctgacctgaataaac |
36406569 |
T |
|
| Q |
348 |
ttgt |
351 |
Q |
| |
|
|||| |
|
|
| T |
36406570 |
ttgt |
36406573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 48 - 322
Target Start/End: Original strand, 36428335 - 36428609
Alignment:
| Q |
48 |
tgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtc |
147 |
Q |
| |
|
||||||||| |||| || |||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
36428335 |
tgcaaaaataatgaaatgggatttaagagacaaacatttcagggttgcttggttagtggacaagagatagcagtgaaaagattgtccagagattcaggtc |
36428434 |
T |
|
| Q |
148 |
aaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
247 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36428435 |
aaggcaaagaagagtttaagaatgaaattaaacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
36428534 |
T |
|
| Q |
248 |
gatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatgtgtctctctgactcact |
322 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
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|
| T |
36428535 |
gatgctagtttatgaatatctaccaaacaaaagcctagacttctttatatttggtatgtctctctgcgactcact |
36428609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 48 - 351
Target Start/End: Original strand, 36418355 - 36418658
Alignment:
| Q |
48 |
tgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtc |
147 |
Q |
| |
|
||||||||| |||| || |||||||||||| ||| ||| ||||| | |||| |||||||||||||||||||||||||||||||||| ||| || |||| |
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| T |
36418355 |
tgcaaaaataatgaaatgggatttaagagacaaacatttcagggctttttggaaaatggacaagagatagcagtgaaaagattgtccagagattctggtc |
36418454 |
T |
|
| Q |
148 |
aaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
247 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36418455 |
aaggcaaagaagagtttaagaatgaaattaaacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
36418554 |
T |
|
| Q |
248 |
gatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatgtgtctctctgactcactcattgtctctctagcttgaataaac |
347 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| | ||||||||| |
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| T |
36418555 |
gatgctagtttacgaatacctatcaaacaaaagcctagacttctttatattcggtatgcctctctctgaatcaatcattgtctctctaacctgaataaac |
36418654 |
T |
|
| Q |
348 |
ttgt |
351 |
Q |
| |
|
|||| |
|
|
| T |
36418655 |
ttgt |
36418658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 75 - 322
Target Start/End: Original strand, 36434860 - 36435107
Alignment:
| Q |
75 |
agataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtcaaggcaaagtagagtttaaaaatgaaa |
174 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||| |||| |
|
|
| T |
36434860 |
agatagaaattgcagggttgcttggctaatggacaagagatagcagtgaaaagattgtccaaaaattcaggtcaaggaaaagaagagtttaaaactgaag |
36434959 |
T |
|
| Q |
175 |
ttacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgttagtttatgaatacctaccaaa |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36434960 |
ttacgcttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgttagtttatgaatacctaccaaa |
36435059 |
T |
|
| Q |
275 |
caaaagcctagacttctttatattcggtatgtgtctctctgactcact |
322 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
36435060 |
caaaagcctggacttctttatattcggtatgtctctctgtgactcact |
36435107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 48 - 314
Target Start/End: Original strand, 36375229 - 36375495
Alignment:
| Q |
48 |
tgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtc |
147 |
Q |
| |
|
||||||||| |||| || |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
36375229 |
tgcaaaaataatgaaatgggatttaagagagaaatatttcagggttgcttggttaatggacaagagatagcagtgaaaagattgtcgaaaaattcaggtc |
36375328 |
T |
|
| Q |
148 |
aaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
247 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
36375329 |
aaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatctagtgaggttgctaggttgttgctttgaaaaggaagaaag |
36375428 |
T |
|
| Q |
248 |
gatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatgtgtctctct |
314 |
Q |
| |
|
|||| | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| | ||||||| |
|
|
| T |
36375429 |
gatgctggtttatgaatacttaccaaacaaaagcctagatttctttatatttggtatctctctctct |
36375495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 48 - 341
Target Start/End: Original strand, 36388952 - 36389245
Alignment:
| Q |
48 |
tgcaaaaattatgacataggatttaagagataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtc |
147 |
Q |
| |
|
||||| ||| |||| || |||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
36388952 |
tgcaagaataatgaaatgggatttaagagagaaatatttcagggtagcttggttaatggacaagagatagcagtgaaaagattgtcgcaaaattcaggtc |
36389051 |
T |
|
| Q |
148 |
aaggcaaagtagagtttaaaaatgaaattacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaag |
247 |
Q |
| |
|
|||| |||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36389052 |
aaggaaaagaagagtttaaaactgaagttaaacttttagttaaactccaacacagaaatctagtaaggttgctcagttgttgctttgaaaaagaagaaag |
36389151 |
T |
|
| Q |
248 |
gatgttagtttatgaatacctaccaaacaaaagcctagacttctttatattcggtatgtgtctctctgactcactcattgtctctctagcttga |
341 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||| | ||||||||| ||| | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
36389152 |
gatgctagtttatgaatacttaccaaacaaaagcctagacctttttatattcagtaagcatctctcaaactcacttattgtctctctagcttga |
36389245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 76 - 343
Target Start/End: Original strand, 36370017 - 36370284
Alignment:
| Q |
76 |
gataaaaattgcagggttgcttggttaatggacaagagatagcagtgaaaagattgtccaaagaatcaggtcaaggcaaagtagagtttaaaaatgaaat |
175 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| | |
|
|
| T |
36370017 |
gataaaaatttcagggttgcttggttagtggaaaagagattgcagtgaaaagattgtccagagattcaggtcaaggcaaagaagagtttaaaaatgaagt |
36370116 |
T |
|
| Q |
176 |
tacacttttagttaaactccaacacagaaatctagtgaggttgctcggttgttgctttgaaaaagaagaaaggatgttagtttatgaatacctaccaaac |
275 |
Q |
| |
|
|| ||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
36370117 |
taaacttttagtcaaacttcaacacagaaatctagtgaggttgcttggttgttgttttgaaaaagaagaaaggatgctagtttatgaatacttaccaaac |
36370216 |
T |
|
| Q |
276 |
aaaagcctagacttctttatattcggtatgtgtctctctgactcactcattgtctctctagcttgaat |
343 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||| ||| |||| ||||||| |||||||| ||||| |
|
|
| T |
36370217 |
aaaagcctagacttctttatattcagtaagcatctttctagctcagtcattgtatctctagcctgaat |
36370284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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