View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0789_low_9 (Length: 369)
Name: NF0789_low_9
Description: NF0789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0789_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 43 - 266
Target Start/End: Original strand, 35444334 - 35444557
Alignment:
| Q |
43 |
acccctactcttacataacgcaacgtccgtccaagtcatgctcacgtgaacttctttatgtgatatttaacccgattaataacaatttcattttaaagtc |
142 |
Q |
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| T |
35444334 |
acccctactcttgcataacgcgacgtccgtccgagtcatgctcacgtgaacttttttatgtgatatttaacccgattaataacaatttcattttaaagtc |
35444433 |
T |
|
| Q |
143 |
ataatgtgaagtaaaacgtgcagctaatccgatcatcatgcgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataa |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35444434 |
ataatgtgaagtaaaacgtgcagctaatccgatcatcatgtgaagtaaaataaagtgcagttaatccactcgaaaaacatataggttggagagcgtataa |
35444533 |
T |
|
| Q |
243 |
ggtgcattaccatgttattcaata |
266 |
Q |
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|||||||||| |||||||| |||| |
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| T |
35444534 |
ggtgcattactatgttatttaata |
35444557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 35445668 - 35445746
Alignment:
| Q |
258 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
336 |
Q |
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| T |
35445668 |
tattcaataatcataatcaattttctccaaaaatgttacagtaataaaaatcacaatacaaatgttcaaataagtagtt |
35445746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 4224424 - 4224376
Alignment:
| Q |
1 |
cacccctaacccataaacatcattttccttacaaactctaccaccccta |
49 |
Q |
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| T |
4224424 |
cacccctaacccataaacatcattttccttacaaacactaccaccccta |
4224376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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