View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790-Insertion-2 (Length: 290)

Name: NF0790-Insertion-2
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790-Insertion-2
NF0790-Insertion-2
[»] chr4 (23 HSPs)
chr4 (8-158)||(23408671-23408821)
chr4 (8-154)||(23868733-23868879)
chr4 (8-158)||(23402071-23402221)
chr4 (8-158)||(23453503-23453653)
chr4 (8-154)||(24307224-24307370)
chr4 (8-154)||(23415840-23415986)
chr4 (8-154)||(23885828-23885974)
chr4 (8-154)||(26832736-26832882)
chr4 (8-154)||(26434025-26434171)
chr4 (8-154)||(26435805-26435951)
chr4 (15-154)||(34662179-34662318)
chr4 (198-290)||(23401939-23402031)
chr4 (192-290)||(24307088-24307186)
chr4 (189-286)||(26832604-26832701)
chr4 (198-290)||(23408861-23408953)
chr4 (189-283)||(23416018-23416112)
chr4 (189-290)||(23868597-23868698)
chr4 (189-286)||(26433893-26433990)
chr4 (189-286)||(26435673-26435770)
chr4 (189-283)||(23885699-23885793)
chr4 (195-286)||(34662359-34662450)
chr4 (201-283)||(23453696-23453778)
chr4 (12-65)||(23451867-23451920)
[»] chr1 (4 HSPs)
chr1 (15-154)||(41670401-41670540)
chr1 (12-157)||(40795767-40795912)
chr1 (8-154)||(29391467-29391613)
chr1 (26-62)||(33216558-33216594)
[»] chr7 (2 HSPs)
chr7 (27-154)||(40180420-40180547)
chr7 (26-62)||(47317395-47317431)
[»] chr8 (1 HSPs)
chr8 (29-154)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 23408671 - 23408821
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||    
T  23408671 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtct 23408770  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 158  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  23408771 gggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 23868879 - 23868733
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868879 gtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 23868780  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    |||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23868779 gggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 23402221 - 23402071
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  23402221 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtct 23402122  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 158  Q
    |||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23402121 gggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 23453503 - 23453653
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  23453503 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtct 23453602  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 158  Q
    |||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23453603 gggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 24307370 - 24307224
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307370 gtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 24307271  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    ||||||||||||||||| || ||||| || |||||||||||||||||    
T  24307270 gggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 23415840 - 23415986
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  23415840 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtct 23415939  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    |||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23415940 gggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 23885974 - 23885828
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  23885974 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtct 23885875  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    |||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23885874 gggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 26832882 - 26832736
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  26832882 gtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtct 26832783  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26832782 gggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 26434171 - 26434025
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  26434171 gtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtct 26434072  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    || |||||||||||||| || ||||| ||||||||||||||||||||    
T  26434071 ggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 26435951 - 26435805
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    |||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  26435951 gtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtct 26435852  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    ||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26435851 gggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 34662179 - 34662318
Alignment:
Q  15 gcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaa 114  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||    
T  34662179 gcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaa 34662278  T
Q  115 cttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    |||||||||| || ||||| |||||||||||||| |||||    
T  34662279 cttgtttcagaaccttgaagatgtagatcttgtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 198 - 290
Target Start/End: Complemental strand, 23402031 - 23401939
Alignment:
Q  198 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23402031 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggt 23401939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 192 - 290
Target Start/End: Complemental strand, 24307186 - 24307088
Alignment:
Q  192 gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggt 290  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggt 24307088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 26832701 - 26832604
Alignment:
Q  189 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 286  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26832701 ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26832604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 23408861 - 23408953
Alignment:
Q  198 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggt 290  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23408861 gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggt 23408953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 23416018 - 23416112
Alignment:
Q  189 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 283  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23416018 ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctc 23416112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 189 - 290
Target Start/End: Complemental strand, 23868698 - 23868597
Alignment:
Q  189 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 288  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23868698 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg 23868599  T
Q  289 gt 290  Q
    ||    
T  23868598 gt 23868597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 26433990 - 26433893
Alignment:
Q  189 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 286  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26433990 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26433893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 26435770 - 26435673
Alignment:
Q  189 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 286  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26435770 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgc 26435673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 23885793 - 23885699
Alignment:
Q  189 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 283  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  23885793 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctc 23885699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 195 - 286
Target Start/End: Original strand, 34662359 - 34662450
Alignment:
Q  195 gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgc 286  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34662359 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgc 34662450  T

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Target: chr4; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 23453696 - 23453778
Alignment:
Q  201 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctc 283  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctc 23453778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 23451867 - 23451920
Alignment:
Q  12 cgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaa 65  Q
    ||||||||||||||  |||||||||| |||||||| |||||||| |||||||||    
T  23451867 cgagcaagtctggagtattcttgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 41670540 - 41670401
Alignment:
Q  15 gcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaa 114  Q
    ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| || ||||    
T  41670540 gcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaa 41670441  T
Q  115 cttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    | || || || || ||||| |||||||||||||| |||||    
T  41670440 cctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 40795912 - 40795767
Alignment:
Q  12 cgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggt 111  Q
    ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || ||||| || ||||| ||||| |||||||| || |    
T  40795912 cgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggat 40795813  T
Q  112 gaacttgtttcagtactttgaatatgtagatcttgtatgtttctac 157  Q
    |||| || || || || ||||| |||||||||||||| ||||||||    
T  40795812 gaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 29391613 - 29391467
Alignment:
Q  8 gtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtct 107  Q
    ||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||| || ||     
T  29391613 gtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctatatca 29391514  T
Q  108 gggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 154  Q
    || ||||| ||||| || || ||||| ||||| ||||| || |||||    
T  29391513 ggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  26 tgattcttgagcaagcttctcgaagatatcattgatg 62  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 40180420 - 40180547
Alignment:
Q  27 gattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagta 126  Q
    ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| || || || ||||| |||||||| |    
T  40180420 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 40180519  T
Q  127 ctttgaatatgtagatcttgtatgtttc 154  Q
    | ||||| ||||| |||||||| |||||    
T  40180520 ccttgaagatgtatatcttgtaggtttc 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  26 tgattcttgagcaagcttctcgaagatatcattgatg 62  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 154
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
Q  29 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact 128  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || ||     
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  129 ttgaatatgtagatcttgtatgtttc 154  Q
    |||||||| || |||||||| |||||    
T  29684726 ttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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