View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790-Insertion-4 (Length: 188)
Name: NF0790-Insertion-4
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (7 HSPs) |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 17441864 - 17442044
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
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||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17441864 |
gcatccatgtcatccacagaaaaaaatctcgaaccgccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttacagatgaagt |
17441963 |
T |
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| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaactgttg |
188 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
17441964 |
ttctactgaatctccacagaaaaaaatcttgaacctccatatcattggtcgattcattggtcagttcctcaacaactgttg |
17442044 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 1e-39; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 33283672 - 33283492
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
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|||| |||||||||||||| |||| |||| ||||||||||||||||| |||||||||| | ||||| ||| ||||||||||||||||||||||| |
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| T |
33283672 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccggattcacctgttgcagatgaagt |
33283573 |
T |
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| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaactgttg |
188 |
Q |
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| T |
33283572 |
ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcgattcattggtcggttcctcagcaactgttg |
33283492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 33387144 - 33386968
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
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|||| |||||||||||||| |||| |||| ||||||||||||||||| ||||||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
33387144 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaagagaagtatccgtggaggcagcagattcacctgttgcagatgaagt |
33387045 |
T |
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| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaact |
184 |
Q |
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| T |
33387044 |
ttctactgaatctcaacagaaaaaaatctcaaacctccatatcatttgtcgattcattggtcggttcctcaacaact |
33386968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 33357966 - 33357835
Alignment:
| Q |
34 |
tctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacagnnnnnnn |
133 |
Q |
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|||| |||| |||||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33357966 |
tctcaaacctccatatcagccaaagaaacagaagaatccgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctccacag-aaaaaa |
33357868 |
T |
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| Q |
134 |
tcttgaacctccatatcattgttcaattcattg |
166 |
Q |
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||| ||||||||||||||||| || |||||||| |
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| T |
33357867 |
tctcgaacctccatatcattggtcgattcattg |
33357835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 33261612 - 33261510
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
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|||| |||||||||||||| |||| |||| ||||||||||||||||| |||||||||| | ||||| |||||||||||||| |||||||||||| |
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| T |
33261612 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaacagaagtatccgcggaggcaccagattcacctgctgcagatgaagt |
33261513 |
T |
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| Q |
108 |
ttc |
110 |
Q |
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||| |
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| T |
33261512 |
ttc |
33261510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 33418536 - 33418459
Alignment:
| Q |
45 |
catatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc |
122 |
Q |
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|||||||||||||||| | |||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||| |
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| T |
33418536 |
catatcagccacagaaacggaagtatccgtggaggtacaagattcacctgttgccgatgaagtttctggtgaatctcc |
33418459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 33302962 - 33302888
Alignment:
| Q |
48 |
atcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagtttctactgaatctcc |
122 |
Q |
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| T |
33302962 |
atcagccacagaaacggaagtatctgtggaggtacaagattcacctgttatcgatgaagtttctagtgaatctcc |
33302888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 33261511 - 33261466
Alignment:
| Q |
143 |
tccatatcattgttcaattcattggtcagttcctcaacaactgttg |
188 |
Q |
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| T |
33261511 |
tccatatcattggtcaattcattggtcggttcctcagcaactgttg |
33261466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 5435 - 5255
Alignment:
| Q |
8 |
gcatccatgtcatccacagnnnnnnntctccaaccaccatatcagccacagaagcagaagtatctgtggaggtaccagattcacctgttgcagatgaagt |
107 |
Q |
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|||| |||||||||||||| |||| |||| ||||||||||||||||| | |||||||| | ||||| ||| |||||||||||||| ||||||| |
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| T |
5435 |
gcattcatgtcatccacagaaataaatctcgaacctccatatcagccacagaaactgaagtatccgcggaggcaccgaattcacctgttgcaaatgaagt |
5336 |
T |
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| Q |
108 |
ttctactgaatctccacagnnnnnnntcttgaacctccatatcattgttcaattcattggtcagttcctcaacaactgttg |
188 |
Q |
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|||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
5335 |
ttctactgaatctcaacagaaaaaaatctcgaacctccatatcattggtcaattcattggtcggttcctcagcaactgttg |
5255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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