View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790-Insertion-6 (Length: 144)

Name: NF0790-Insertion-6
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790-Insertion-6
NF0790-Insertion-6
[»] chr1 (1 HSPs)
chr1 (7-144)||(7122442-7122579)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 4e-70; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 4e-70
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 7122579 - 7122442
Alignment:
Q  7 aaatccaacgctgtatattgcttttcctagggttcccattttcgatggagaattcgaatttggatttccttaagcgatttagaataatttctccgtggtg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7122579 aaatccaacgctgtatattgcttttcctagggttcccattttcgatggagaattcgaatttggatttccttaagcgatttagaagaatttctccgtggtg 7122480  T
Q  107 ttatggaatatgtgaagaaggaaaatggtggtgagtgg 144  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7122479 ttatggaatatgtgaagaaggaaaatggtggtgagtgg 7122442  T

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