View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_high_7 (Length: 363)

Name: NF0790_high_7
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_high_7
NF0790_high_7
[»] chr3 (8 HSPs)
chr3 (133-363)||(24982014-24982244)
chr3 (130-363)||(24497240-24497473)
chr3 (101-363)||(24923415-24923674)
chr3 (134-363)||(25085006-25085235)
chr3 (101-363)||(24919839-24920100)
chr3 (126-363)||(31825534-31825771)
chr3 (134-363)||(21584582-21584811)
chr3 (134-171)||(14858633-14858670)
[»] chr7 (4 HSPs)
chr7 (137-333)||(10575385-10575581)
chr7 (142-328)||(39954838-39955024)
chr7 (189-333)||(354402-354547)
chr7 (225-333)||(10580785-10580893)
[»] chr8 (1 HSPs)
chr8 (134-333)||(14261017-14261216)
[»] chr2 (1 HSPs)
chr2 (165-307)||(41027596-41027738)
[»] chr4 (3 HSPs)
chr4 (159-313)||(22898571-22898725)
chr4 (159-313)||(22950239-22950393)
chr4 (142-328)||(53328717-53328903)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 133 - 363
Target Start/End: Complemental strand, 24982244 - 24982014
Alignment:
Q  133 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  24982244 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 24982145  T
Q  233 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24982144 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctctt 24982045  T
Q  333 catctcactcgacgaatagcaggcttggtga 363  Q
    | |  || |||||||||||||||||||||||    
T  24982044 cttgccaatcgacgaatagcaggcttggtga 24982014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 130 - 363
Target Start/End: Original strand, 24497240 - 24497473
Alignment:
Q  130 tttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctc 229  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24497240 tttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc 24497339  T
Q  230 agtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacct 329  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24497340 agtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacct 24497439  T
Q  330 cttcatctcactcgacgaatagcaggcttggtga 363  Q
    |||| |  || |||||||||||||||||||||||    
T  24497440 cttcttgccaatcgacgaatagcaggcttggtga 24497473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 101 - 363
Target Start/End: Original strand, 24923415 - 24923674
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    ||||||||||||||||||| |||| |||| | ||||||   |||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24923415 aaaaataaactaaagagtgtttcttcttcatattcttc---aacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatg 24923511  T
Q  201 gctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    |||||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923512 gctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcataga 24923611  T
Q  301 tcaaaccactgattctcttaacaccacctcttcatctcactcgacgaatagcaggcttggtga 363  Q
    ||||||||||||||||||||||||||||||||| |  || |||||||||||||||||||||||    
T  24923612 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtga 24923674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 134 - 363
Target Start/End: Complemental strand, 25085235 - 25085006
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25085235 tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtg 25085136  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  25085135 tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc 25085036  T
Q  334 atctcactcgacgaatagcaggcttggtga 363  Q
        || || |||||| |||||||||||||    
T  25085035 tcgccaatctacgaatggcaggcttggtga 25085006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 101 - 363
Target Start/End: Original strand, 24919839 - 24920100
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    |||||||||||||| ||||||||| |||| | |||  | |||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||    
T  24919839 aaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatg 24919937  T
Q  201 gctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24919938 gctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcataga 24920037  T
Q  301 tcaaaccactgattctcttaacaccacctcttcatctcactcgacgaatagcaggcttggtga 363  Q
    ||||||| ||||||||||| ||||||||||||| |  || ||||||||| |||||||||||||    
T  24920038 tcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtga 24920100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 126 - 363
Target Start/End: Original strand, 31825534 - 31825771
Alignment:
Q  126 cttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgt 225  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||||||||||||||    
T  31825534 cttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgt 31825633  T
Q  226 gctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacacc 325  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  31825634 gctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacacc 31825733  T
Q  326 acctcttcatctcactcgacgaatagcaggcttggtga 363  Q
    ||||||||    || ||||||||| |||||||| ||||    
T  31825734 acctcttctcgccaatcgacgaatggcaggcttagtga 31825771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 134 - 363
Target Start/End: Original strand, 21584582 - 21584811
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| |||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  334 atctcactcgacgaatagcaggcttggtga 363  Q
        || ||||||||| || ||||||||||    
T  21584782 tcgccaatcgacgaatcgctggcttggtga 21584811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 14858633 - 14858670
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttcctt 171  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  14858633 tcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 137 - 333
Target Start/End: Complemental strand, 10575581 - 10575385
Alignment:
Q  137 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtat 236  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || |||||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  237 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttc 10575385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 142 - 328
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| |||||||||||||| || ||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 328  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| ||||||||    
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc 39955024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 333
Target Start/End: Complemental strand, 354547 - 354402
Alignment:
Q  189 acaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 288  Q
    ||||||||||| || |||| |||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  289 tttcttcataga-tcaaaccactgattctcttaacaccacctcttc 333  Q
    |||| ||||||| | ||||||||||| ||||| |||||||||||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttc 354402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 10580893 - 10580785
Alignment:
Q  225 tgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 324  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  325 cacctcttc 333  Q
    || ||||||    
T  10580793 caactcttc 10580785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 134 - 333
Target Start/End: Original strand, 14261017 - 14261216
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || || || ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 41027738 - 41027596
Alignment:
Q  165 cttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 264  Q
    ||||||||||||||||| ||||| ||||||||||| || || |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  265 agaagatcttcaagacacctctggtttcttcatagatcaaacc 307  Q
    | ||||||||||| || || |  || ||||| |||||||||||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc 41027596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 313
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 313  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 313
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 313  Q
    ||||||| || |||||||| || || |  || || ||||| ||||||||||||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 328
Target Start/End: Complemental strand, 53328903 - 53328717
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || || |||||||| |  | ||| ||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc 328  Q
     |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| ||||||||    
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 53328717  T

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