View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_1 (Length: 657)

Name: NF0790_low_1
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_1
NF0790_low_1
[»] chr5 (2 HSPs)
chr5 (1-317)||(4284361-4284669)
chr5 (430-629)||(4284049-4284248)
[»] chr7 (2 HSPs)
chr7 (521-598)||(23428538-23428615)
chr7 (257-313)||(23429422-23429478)
[»] chr2 (2 HSPs)
chr2 (514-568)||(25978334-25978388)
chr2 (512-565)||(4039751-4039804)
[»] chr4 (2 HSPs)
chr4 (430-471)||(8682280-8682321)
chr4 (430-469)||(6348737-6348776)
[»] chr6 (1 HSPs)
chr6 (512-568)||(16999818-16999874)
[»] chr8 (1 HSPs)
chr8 (512-568)||(4183535-4183591)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 4284669 - 4284361
Alignment:
Q  1 ttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacagg 100  Q
    |||||||||||||||||||||||||        |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||     
T  4284669 ttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacagt 4284575  T
Q  101 ttctgctcgttcacattttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttccaaacctaaannnnnnnc 200  Q
    ||| ||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |    
T  4284574 ttc-gca-gttcacattttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttcaaaacctaaa-ttttttc 4284478  T
Q  201 tcagtaacaatcaaatcaaattcgaacttcttcaagttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttcta 300  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4284477 tcagtaataatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttcta 4284378  T
Q  301 gaagacaccaatggcgg 317  Q
    |||||||||||||||||    
T  4284377 gaagacaccaatggcgg 4284361  T

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Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 430 - 629
Target Start/End: Complemental strand, 4284248 - 4284049
Alignment:
Q  430 aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacggaaatcactgccgatctccctgttaaccaccgtcactctc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  4284248 aaatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacagaaatcactgccgatctccccgttaaccaccgtcactctc 4284149  T
Q  530 tctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaactccctacatcaacaatctccggtatattaat 629  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4284148 tctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaactccctacatcaacaatctccggtatgttaat 4284049  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 598
Target Start/End: Complemental strand, 23428615 - 23428538
Alignment:
Q  521 gtcactctctctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaac 598  Q
    |||||||| |||| ||||||| ||||||||||||||||| ||||| | || ||||||||||||| |||||||| ||||    
T  23428615 gtcactctttctactcctccgaccacgtttgtttcatcattcctcaagtcttcatcgtcgatctgttaacaaataaac 23428538  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 23429478 - 23429422
Alignment:
Q  257 caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg 313  Q
    ||||||||||||||||||||  | ||||||||||  | |||||||||||||||||||    
T  23429478 caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg 23429422  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 514 - 568
Target Start/End: Original strand, 25978334 - 25978388
Alignment:
Q  514 aaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa 568  Q
    ||||||| || |||||| ||||||||||||||| |||||||||||||||||||||    
T  25978334 aaccaccatcgctctctatattcctccggccacatttgtttcatcactcctcgaa 25978388  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 512 - 565
Target Start/End: Complemental strand, 4039804 - 4039751
Alignment:
Q  512 ttaaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctc 565  Q
    ||||||||| || |||||| ||||||||||||||| ||||||| ||||||||||    
T  4039804 ttaaccaccatcgctctctttattcctccggccacatttgtttgatcactcctc 4039751  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 471
Target Start/End: Complemental strand, 8682321 - 8682280
Alignment:
Q  430 aaatccaaaatcaatttccatctcaaaaccctaaacccccaa 471  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  8682321 aaatccaaaatcaatttccatctcaaaaccctaaaccaccaa 8682280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 469
Target Start/End: Original strand, 6348737 - 6348776
Alignment:
Q  430 aaatccaaaatcaatttccatctcaaaaccctaaaccccc 469  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  6348737 aaatacaaaatcaatttgcatctcaaaaccctaaaccccc 6348776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 512 - 568
Target Start/End: Complemental strand, 16999874 - 16999818
Alignment:
Q  512 ttaaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa 568  Q
    ||||||||| || |||||| ||||||||||||||| ||||||| |||||||||||||    
T  16999874 ttaaccaccatcgctctctatattcctccggccacatttgttttatcactcctcgaa 16999818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 568
Target Start/End: Complemental strand, 4183591 - 4183535
Alignment:
Q  512 ttaaccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa 568  Q
    ||||||||| || |||||| |||||||||||||||  |||||| |||||||||||||    
T  4183591 ttaaccaccatcgctctctatattcctccggccacaattgttttatcactcctcgaa 4183535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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