View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_10 (Length: 465)
Name: NF0790_low_10
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 90 - 397
Target Start/End: Original strand, 1887174 - 1887482
Alignment:
| Q |
90 |
cgtttctatctccttaatccctccaccttttggtcctcgtaaaatcaaccc-tcgctcgctttcattctctttgtccccatcaccgtgttcacctggtcc |
188 |
Q |
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| T |
1887174 |
cgtttctatctccttaatccctccaccttttggtcctcgtaaaatcaacccctcgctcgctttcattctctttgtccccatcaccgtgttcacctggtcc |
1887273 |
T |
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| Q |
189 |
gttgcggcactttgtctctttggaagagttggctttccattgttggtttctttctttctgctattttatcgatgctgattccttacctttacacgcacca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1887274 |
gttgcggcactttgtctctttggaagagttggctttccattgttggtttctttctttctgctattttatcgatgctgattccttacctttacacgcacca |
1887373 |
T |
|
| Q |
289 |
cattgcaacttgggagtttgtagccgagcagactgtgtttttggttcctacttttgctatcttcttctgttgggaattgactcatactttacatcgggtc |
388 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1887374 |
cattgcaacttgggagtttgtagccgagcagattgtgtttttggttcctacttttgctatcttcttctgttgggaattgactcatactttacatcgggtt |
1887473 |
T |
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| Q |
389 |
tgtgctcct |
397 |
Q |
| |
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|||| |||| |
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| T |
1887474 |
tgtgttcct |
1887482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 1671445 - 1671314
Alignment:
| Q |
90 |
cgtttctatctccttaatccctccaccttttggtcctcgtaaaatcaacc-ctcgctcgctttcattctctttgtccccatcaccgtgttcacctggtcc |
188 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||| |||||||| |
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| T |
1671445 |
cgtttctatctccttaatcccttcaccttttggtcctcgtaaaatcaacctctcgctcgctttccttctctttgtccccatcttcgcgttctcctggtcc |
1671346 |
T |
|
| Q |
189 |
gttgcggcactttgtctctttggaagagttgg |
220 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
1671345 |
gttgcggcgctttgtctctttggaagagttgg |
1671314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 220 - 397
Target Start/End: Complemental strand, 1671071 - 1670885
Alignment:
| Q |
220 |
gctttccattgttggtttctttctttctgctattttatcgatgctgattccttacctttacac--gcacca-------cattgcaacttgggagtttgta |
310 |
Q |
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|||||||||||||||||||||| |||||||||||||||| || |||||||| ||| | || | || || || ||||||| ||||||||||| |
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| T |
1671071 |
gctttccattgttggtttcttttcttctgctattttatcggtgatgattcctgaccctgaccctttcatcaagtgcatcactgcaactcgggagtttgta |
1670972 |
T |
|
| Q |
311 |
gccgagcagactgtgtttttggttcctacttttgctatcttcttctgttgggaattgactcatactttacatcgggtctgtgctcct |
397 |
Q |
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|||||||||| |||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
1670971 |
gccgagcagattgtgttatttgttgctacttttgctatcttcttctgttgggaattgactcatactttacatcgggtttgtgttcct |
1670885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 5996103 - 5996180
Alignment:
| Q |
305 |
tttgtagccgagcagactgtgtttttggttcctacttttgctatcttcttctgttgggaattgactcatactttacat |
382 |
Q |
| |
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||||| || ||||||| ||| ||||| ||| ||| ||| |||||||||||| |||||||||||||||| | ||||||| |
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| T |
5996103 |
tttgttgctgagcagattgtattttttgttgctagtttcgctatcttcttcagttgggaattgactcacaatttacat |
5996180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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