View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_12 (Length: 453)
Name: NF0790_low_12
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 97 - 433
Target Start/End: Original strand, 10103781 - 10104117
Alignment:
| Q |
97 |
acattggagatgatagaacggatgaagatgcttttaaggtatgtttagttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt |
196 |
Q |
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| T |
10103781 |
acattggagatgatagaacagatgaagatgcttttaaggtatgtttggttaaaatagaaaactcattttgaagagatgttgatttcaaagaataatattt |
10103880 |
T |
|
| Q |
197 |
ccttacgacatttatttattaactactccatctattctaaaataagatcatgctactgactgtaacactcgttcaagnnnnnnnnnnnnnnnnnncataa |
296 |
Q |
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| T |
10103881 |
ccttacgatatttatttattaactactccatctattctaaaataagatcatgctaccgactgcgacacttgttcaag-aaaaaaaaaacataaaacataa |
10103979 |
T |
|
| Q |
297 |
attttgttttgaaaaga-nnnnnnnnacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaacaaaaattgt |
395 |
Q |
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| T |
10103980 |
attttgttttgaaaagatttttttttacaattattttagaatggatggagtattgtttttaatccatgttaaacatttatacaatcaaaagaaaaattgt |
10104079 |
T |
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| Q |
396 |
tcaatatatgaaggttaagttgaagttgatgatgatgt |
433 |
Q |
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| T |
10104080 |
tcaatatatgaaggttaagttgaagttgatgaggatgt |
10104117 |
T |
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