View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_13 (Length: 448)
Name: NF0790_low_13
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_13 |
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| [»] scaffold0891 (1 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 4510 - 4092
Alignment:
| Q |
8 |
tatcataggagaataacagtgatggatagttgaaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtgttggaag |
107 |
Q |
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| T |
4510 |
tatcataggagaataacagtgatggatagttggaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtgttggaag |
4411 |
T |
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| Q |
108 |
ataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgattaattaa |
207 |
Q |
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| T |
4410 |
ataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgattaattaa |
4311 |
T |
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| Q |
208 |
gtgttttttccccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatag |
307 |
Q |
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| T |
4310 |
gtgttttttccccataaaatattgcatatagtcaatcataagaacttaaaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatag |
4211 |
T |
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| Q |
308 |
aacagaaatgttgcatctcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4210 |
aacagaaatgttgcatctcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctg |
4111 |
T |
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| Q |
408 |
gaaattattgtatgatgat |
426 |
Q |
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| T |
4110 |
gaaattattgtatgatgat |
4092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 218 - 426
Target Start/End: Original strand, 35774168 - 35774380
Alignment:
| Q |
218 |
cccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatagaacagaaatg |
317 |
Q |
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|||| |||||||||| |||||| ||| |||||||| ||| |||||| ||| || | |||||||||||||||||||||||||||||||||||||||| |
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| T |
35774168 |
cccagaaaatattgcttatagttaatattaagaactaacattaataagacctta----ttaagtggaaatagtttagctaaaagtaatagaacagaaatg |
35774263 |
T |
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| Q |
318 |
ttg------catctcaacaaaatacatagaccata--ctaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctgga |
409 |
Q |
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| T |
35774264 |
tcgatgtcgcatctcaacaaaatatatagaccatatactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctgga |
35774363 |
T |
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| Q |
410 |
aattattgtatgatgat |
426 |
Q |
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| T |
35774364 |
aattattgtatgatgat |
35774380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 35848122 - 35848161
Alignment:
| Q |
387 |
aacctctttgataaacttctggaaattattgtatgatgat |
426 |
Q |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgat |
35848161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 141 - 102
Alignment:
| Q |
387 |
aacctctttgataaacttctggaaattattgtatgatgat |
426 |
Q |
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| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgat |
102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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