View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_15 (Length: 439)

Name: NF0790_low_15
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_15
NF0790_low_15
[»] chr3 (8 HSPs)
chr3 (133-412)||(24981965-24982244)
chr3 (130-412)||(24497240-24497522)
chr3 (101-412)||(24923415-24923723)
chr3 (134-412)||(25084957-25085235)
chr3 (101-412)||(24919839-24920149)
chr3 (126-376)||(31825534-31825784)
chr3 (134-412)||(21584582-21584860)
chr3 (134-171)||(14858633-14858670)
[»] chr7 (4 HSPs)
chr7 (137-391)||(10575327-10575581)
chr7 (142-412)||(39954838-39955108)
chr7 (189-397)||(354338-354547)
chr7 (225-391)||(10580727-10580893)
[»] chr8 (1 HSPs)
chr8 (134-385)||(14261017-14261268)
[»] chr2 (1 HSPs)
chr2 (165-391)||(41027512-41027738)
[»] chr4 (3 HSPs)
chr4 (142-391)||(53328654-53328903)
chr4 (159-391)||(22898493-22898725)
chr4 (159-391)||(22950161-22950393)
[»] chr5 (1 HSPs)
chr5 (150-388)||(26358549-26358787)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 133 - 412
Target Start/End: Complemental strand, 24982244 - 24981965
Alignment:
Q  133 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  24982244 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 24982145  T
Q  233 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24982144 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctctt 24982045  T
Q  333 cttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||    
T  24982044 cttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctcc 24981965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 130 - 412
Target Start/End: Original strand, 24497240 - 24497522
Alignment:
Q  130 tttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctc 229  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24497240 tttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc 24497339  T
Q  230 agtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacct 329  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24497340 agtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacct 24497439  T
Q  330 cttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  24497440 cttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctcc 24497522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 101 - 412
Target Start/End: Original strand, 24923415 - 24923723
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    ||||||||||||||||||| |||| |||| | ||||||   |||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24923415 aaaaataaactaaagagtgtttcttcttcatattcttc---aacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatg 24923511  T
Q  201 gctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    |||||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923512 gctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcataga 24923611  T
Q  301 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24923612 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcct 24923711  T
Q  401 ctctgctcctcc 412  Q
    || ||| |||||    
T  24923712 ctttgcacctcc 24923723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 134 - 412
Target Start/End: Complemental strand, 25085235 - 25084957
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25085235 tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtg 25085136  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  25085135 tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc 25085036  T
Q  334 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 412  Q
    | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  25085035 tcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctcc 25084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 101 - 412
Target Start/End: Original strand, 24919839 - 24920149
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    |||||||||||||| ||||||||| |||| | |||  | |||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||    
T  24919839 aaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatg 24919937  T
Q  201 gctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24919938 gctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcataga 24920037  T
Q  301 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcct 400  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24920038 tcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcct 24920137  T
Q  401 ctctgctcctcc 412  Q
    || ||| |||||    
T  24920138 ctttgcacctcc 24920149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 126 - 376
Target Start/End: Original strand, 31825534 - 31825784
Alignment:
Q  126 cttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgt 225  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||||||||||||||    
T  31825534 cttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgt 31825633  T
Q  226 gctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacacc 325  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  31825634 gctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacacc 31825733  T
Q  326 acctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgtt 376  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||||||    
T  31825734 acctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgtt 31825784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 134 - 412
Target Start/End: Original strand, 21584582 - 21584860
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| |||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  334 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 412  Q
    | |||||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| || |||| ||| |||||    
T  21584782 tcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctcc 21584860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 14858633 - 14858670
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttcctt 171  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  14858633 tcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 137 - 391
Target Start/End: Complemental strand, 10575581 - 10575327
Alignment:
Q  137 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtat 236  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || |||||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  237 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttg 336  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| |    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcg 10575382  T
Q  337 ccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctt 391  Q
    ||||||||||||| || ||||| ||||| || |||||||| ||||| ||||||||    
T  10575381 ccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaacctt 10575327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 412
Target Start/End: Original strand, 39954838 - 39955108
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| |||||||||||||| || ||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaat 341  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| |||||||| |  ||||| |      
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaaga 39955037  T
Q  342 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctctgctcctcc 412  Q
    |||||||| ||||||||||| || || |||||||| || ||||||||||| || ||||||| |||||||||    
T  39955038 cgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctcc 39955108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 397
Target Start/End: Complemental strand, 354547 - 354338
Alignment:
Q  189 acaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 288  Q
    ||||||||||| || |||| |||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  289 tttcttcataga-tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaa 387  Q
    |||| ||||||| | ||||||||||| ||||| |||||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaa 354348  T
Q  388 ccttcctatg 397  Q
    |||| |||||    
T  354347 ccttgctatg 354338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 225 - 391
Target Start/End: Complemental strand, 10580893 - 10580727
Alignment:
Q  225 tgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 324  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  325 cacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctt 391  Q
    || ||||||| ||||||| |||||| || ||||| || || || || |||||| | | |||||||||    
T  10580793 caactcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaacctt 10580727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 134 - 385
Target Start/End: Original strand, 14261017 - 14261268
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || || || ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T
Q  334 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaag 385  Q
    | || ||||| ||||| || ||||| ||||| || |||||||| ||||||||    
T  14261217 tcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaag 14261268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 165 - 391
Target Start/End: Complemental strand, 41027738 - 41027512
Alignment:
Q  165 cttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 264  Q
    ||||||||||||||||| ||||| ||||||||||| || || |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  265 agaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgat 364  Q
    | ||||||||||| || || |  || ||||| ||||||||||| || || | ||| || || ||||| | |||||| |||||||| |||||||| || ||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaat 41027539  T
Q  365 accctggatgttatcacgaagaacctt 391  Q
     || || |||||||||||||| |||||    
T  41027538 tccttgaatgttatcacgaagcacctt 41027512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 142 - 391
Target Start/End: Complemental strand, 53328903 - 53328654
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || || |||||||| |  | ||| ||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaat 341  Q
     |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| |||||||| | |||||| |      
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgaga 53328704  T
Q  342 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctt 391  Q
    |||||||| |||||||| ||||| |||||||||||||| || ||||||||    
T  53328703 cgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaacctt 53328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 391
Target Start/End: Complemental strand, 22898725 - 22898493
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 358  Q
    ||||||| || |||||||| || || |  || || ||||| |||||||||||||| | ||| || || ||||| |  || |  |||||||| || |||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctt 22898526  T
Q  359 ggtgataccctggatgttatcacgaagaacctt 391  Q
     || || ||||||||||| |||||||| |||||    
T  22898525 tgttattccctggatgttgtcacgaagcacctt 22898493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 391
Target Start/End: Complemental strand, 22950393 - 22950161
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 358  Q
    ||||||| || |||||||| || || |  || || ||||| |||||||||||||| | ||| || || ||||| |  || |  |||||||| || |||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctt 22950194  T
Q  359 ggtgataccctggatgttatcacgaagaacctt 391  Q
     || || ||||||||||| |||||||| |||||    
T  22950193 tgttattccctggatgttgtcacgaagcacctt 22950161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 388
Target Start/End: Original strand, 26358549 - 26358787
Alignment:
Q  150 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 249  Q
    |||||||| ||||| |||||||| ||||| |  ||||| ||||||||||| || || || || || |  | ||| || |||||||| || || |||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  250 ggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaat 349  Q
    | || |||||||| |  || ||||| |  ||||| |  |||||||||||||||| ||||||||| |  || |||||||| |  ||||| |  ||||||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaagacgacgaat 26358748  T
Q  350 agcaggcttggtgataccctggatgttatcacgaagaac 388  Q
     || || ||||| || ||||| |||||||| ||||||||    
T  26358749 cgcgggtttggtaattccctgaatgttatctcgaagaac 26358787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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