View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_17 (Length: 415)

Name: NF0790_low_17
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_17
NF0790_low_17
[»] chr3 (8 HSPs)
chr3 (133-412)||(24981965-24982244)
chr3 (130-388)||(24497240-24497498)
chr3 (101-412)||(24923415-24923723)
chr3 (134-412)||(25084957-25085235)
chr3 (101-412)||(24919839-24920149)
chr3 (126-397)||(31825534-31825805)
chr3 (134-412)||(21584582-21584860)
chr3 (134-171)||(14858633-14858670)
[»] chr7 (4 HSPs)
chr7 (137-388)||(10575330-10575581)
chr7 (142-412)||(39954838-39955108)
chr7 (189-358)||(354377-354547)
chr7 (225-358)||(10580760-10580893)
[»] chr8 (1 HSPs)
chr8 (134-412)||(14261017-14261295)
[»] chr2 (1 HSPs)
chr2 (165-385)||(41027518-41027738)
[»] chr4 (3 HSPs)
chr4 (142-388)||(53328657-53328903)
chr4 (159-385)||(22898499-22898725)
chr4 (159-385)||(22950167-22950393)
[»] chr5 (1 HSPs)
chr5 (150-391)||(26358549-26358790)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 133 - 412
Target Start/End: Complemental strand, 24982244 - 24981965
Alignment:
Q  133 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982244 ttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagt 24982145  T
Q  233 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctctt 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24982144 gtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctctt 24982045  T
Q  333 cttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctctgctcctcc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||| |||||    
T  24982044 cttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctcc 24981965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 130 - 388
Target Start/End: Original strand, 24497240 - 24497498
Alignment:
Q  130 tttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctc 229  Q
    ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  24497240 tttttcttcatcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctc 24497339  T
Q  230 agtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacct 329  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24497340 agtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacct 24497439  T
Q  330 cttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaac 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24497440 cttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaac 24497498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 101 - 412
Target Start/End: Original strand, 24923415 - 24923723
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    ||||||||||||||||||| |||| |||| | ||||||   |||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24923415 aaaaataaactaaagagtgtttcttcttcatattcttc---aacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatg 24923511  T
Q  201 gcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    || || || ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923512 gctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcataga 24923611  T
Q  301 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtct 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||    
T  24923612 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcct 24923711  T
Q  401 ctctgctcctcc 412  Q
    || ||| |||||    
T  24923712 ctttgcacctcc 24923723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 134 - 412
Target Start/End: Complemental strand, 25085235 - 25084957
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  25085235 tcttcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtg 25085136  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  25085135 tatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc 25085036  T
Q  334 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctctgctcctcc 412  Q
    | ||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||| ||| |||||    
T  25085035 tcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctcc 25084957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 101 - 412
Target Start/End: Original strand, 24919839 - 24920149
Alignment:
Q  101 aaaaataaactaaagagtgcttctacttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatg 200  Q
    |||||||||||||| ||||||||| |||| | |||  | |||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||    
T  24919839 aaaaataaactaaa-agtgcttcttcttcatcttcagcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatg 24919937  T
Q  201 gcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 300  Q
    || || || ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24919938 gctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcataga 24920037  T
Q  301 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtct 400  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||    
T  24920038 tcaaaccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcct 24920137  T
Q  401 ctctgctcctcc 412  Q
    || ||| |||||    
T  24920138 ctttgcacctcc 24920149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 126 - 397
Target Start/End: Original strand, 31825534 - 31825805
Alignment:
Q  126 cttctttttcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgt 225  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  31825534 cttcttcttcttcatcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgt 31825633  T
Q  226 gctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacacc 325  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||    
T  31825634 gctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacacc 31825733  T
Q  326 acctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtg 397  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || ||||||||||||||    
T  31825734 acctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtg 31825805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 134 - 412
Target Start/End: Original strand, 21584582 - 21584860
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || |||||||||    
T  21584582 tcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtg 21584681  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| |||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  21584682 tacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc 21584781  T
Q  334 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctctgctcctcc 412  Q
    | |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||||| ||| |||||    
T  21584782 tcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctcc 21584860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 14858633 - 14858670
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttcctt 171  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  14858633 tcttcttcaaccaccaaaaccgtagagggttcttcctt 14858670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 137 - 388
Target Start/End: Complemental strand, 10575581 - 10575330
Alignment:
Q  137 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtat 236  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || |||||||||||     
T  10575581 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaa 10575482  T
Q  237 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttg 336  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| |    
T  10575481 gtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcg 10575382  T
Q  337 ccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaac 388  Q
    ||||||||||||| || ||||| ||||| || |||||||| ||||| |||||    
T  10575381 ccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaac 10575330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 142 - 412
Target Start/End: Original strand, 39954838 - 39955108
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaat 341  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| ||||||||||| |||||||| |  ||||| |      
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaaga 39955037  T
Q  342 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctctgctcctcc 412  Q
    |||||||| ||||||||||| || || |||||||| || |||||||| |||||||| |||| |||||||||    
T  39955038 cgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctcc 39955108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 189 - 358
Target Start/End: Complemental strand, 354547 - 354377
Alignment:
Q  189 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 288  Q
    ||||||||||| || || | |||||||||||| || ||||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  289 tttcttcataga-tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 358  Q
    |||| ||||||| | ||||||||||| ||||| |||||||||||||| ||||||| |||||| || |||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 354377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 358
Target Start/End: Complemental strand, 10580893 - 10580760
Alignment:
Q  225 tgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac 324  Q
    ||||||||||| ||||| |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||| ||||| ||||    
T  10580893 tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac 10580794  T
Q  325 cacctcttcttgccaatcgacgaatagcaggctt 358  Q
    || ||||||| ||||||| |||||| || |||||    
T  10580793 caactcttctcgccaatctacgaatcgctggctt 10580760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 134 - 412
Target Start/End: Original strand, 14261017 - 14261295
Alignment:
Q  134 tcttcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtg 233  Q
    |||||||||||| ||||||||||| |  || ||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||| || || |||||     
T  14261017 tcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagta 14261116  T
Q  234 tatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc 333  Q
    || ||||| ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||| || ||||||||||| ||||| |||||||    
T  14261117 tacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc 14261216  T
Q  334 ttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacttttctgtgtctctctgctcctcc 412  Q
    | || ||||| ||||| || ||||| ||||| || |||||||| |||||||| ||||| |  ||||||| ||| |||||    
T  14261217 tcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctcc 14261295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 165 - 385
Target Start/End: Complemental strand, 41027738 - 41027518
Alignment:
Q  165 cttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctcca 264  Q
    ||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||||||| ||||| ||||| |||||||| || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  265 agaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgat 364  Q
    | ||||||||||| || || |  || ||||| ||||||||||| || || | ||| || || ||||| | |||||| |||||||| |||||||| || ||    
T  41027638 aaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggcttcgtaat 41027539  T
Q  365 accctggatgttatcacgaag 385  Q
     || || ||||||||||||||    
T  41027538 tccttgaatgttatcacgaag 41027518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 388
Target Start/End: Complemental strand, 53328903 - 53328657
Alignment:
Q  142 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 241  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  | ||| ||||| |||||||| ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  242 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaat 341  Q
     |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||| |||||||| | |||||| |      
T  53328803 agcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgaga 53328704  T
Q  342 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaac 388  Q
    |||||||| |||||||| ||||| |||||||||||||| || |||||    
T  53328703 cgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaac 53328657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 385
Target Start/End: Complemental strand, 22898725 - 22898499
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 358  Q
    ||||||| || |||||||| || || |  || || ||||| |||||||||||||| | ||| || || ||||| |  || |  |||||||| || |||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctt 22898526  T
Q  359 ggtgataccctggatgttatcacgaag 385  Q
     || || ||||||||||| ||||||||    
T  22898525 tgttattccctggatgttgtcacgaag 22898499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 385
Target Start/End: Complemental strand, 22950393 - 22950167
Alignment:
Q  159 agggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacat 258  Q
    ||||||||||| |||||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |  || ||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  259 tctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 358  Q
    ||||||| || |||||||| || || |  || || ||||| |||||||||||||| | ||| || || ||||| |  || |  |||||||| || |||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctt 22950194  T
Q  359 ggtgataccctggatgttatcacgaag 385  Q
     || || ||||||||||| ||||||||    
T  22950193 tgttattccctggatgttgtcacgaag 22950167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 391
Target Start/End: Original strand, 26358549 - 26358790
Alignment:
Q  150 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac 249  Q
    |||||||| ||||| |||||||| ||||| |  ||||| ||||||||||| || ||||| || || |  | ||| || |||||||| || || |||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcac 26358648  T
Q  250 ggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaat 349  Q
    | || |||||||| |  || ||||| |  ||||| |  |||||||||||||||| ||||||||| |  || |||||||| |  ||||| |  ||||||||    
T  26358649 gaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaagacgacgaat 26358748  T
Q  350 agcaggcttggtgataccctggatgttatcacgaagaacttt 391  Q
     || || ||||| || ||||| |||||||| |||||||||||    
T  26358749 cgcgggtttggtaattccctgaatgttatctcgaagaacttt 26358790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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