View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_18 (Length: 365)
Name: NF0790_low_18
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 1606345 - 1606604
Alignment:
| Q |
1 |
agtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606345 |
agtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccact |
1606444 |
T |
|
| Q |
101 |
gcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606445 |
gcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
1606544 |
T |
|
| Q |
201 |
tggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgaccct |
260 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1606545 |
tggcacaccgatagaaaactgagagatcggaggctgatcttagcgccactgcttgaccct |
1606604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 1629643 - 1629902
Alignment:
| Q |
1 |
agtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccact |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
1629643 |
agtgttttggaatgggtcacctcgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaataccact |
1629742 |
T |
|
| Q |
101 |
gcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1629743 |
gcggcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
1629842 |
T |
|
| Q |
201 |
tggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgaccct |
260 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
1629843 |
tggcacaccgatagaaaactgagagatcggacgctgatcttagcgccacagcttgaccct |
1629902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 1623467 - 1623721
Alignment:
| Q |
1 |
agtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccact |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| || ||| |
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| T |
1623467 |
agtgttttggaatgggtcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatactact |
1623566 |
T |
|
| Q |
101 |
gcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
200 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
1623567 |
gcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgata |
1623666 |
T |
|
| Q |
201 |
tggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttg |
255 |
Q |
| |
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| |||||||||||||| || ||||||||||||||||||| |||||||||||||| |
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| T |
1623667 |
tagcacaccgatagaagacagagagatcggaggctgatcggagcgccacagcttg |
1623721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10821055 - 10820796
Alignment:
| Q |
1 |
agtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccact |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
10821055 |
agtgttttggaatggatcacctcgaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttgcaattttggaataccact |
10820956 |
T |
|
| Q |
101 |
gcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
200 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| |||| |
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| T |
10820955 |
gcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgata |
10820856 |
T |
|
| Q |
201 |
tggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgaccct |
260 |
Q |
| |
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| | |||||| ||||| || |||||||| |||||||||| |||||||| |||||||||| |
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|
| T |
10820855 |
ttgtacaccggtagaagacggagagatcagaggctgatcggagcgccactgcttgaccct |
10820796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 2576132 - 2576071
Alignment:
| Q |
77 |
atgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagat |
138 |
Q |
| |
|
|||||||||||||||||||| || || || ||||| || |||||||| |||||||||||||| |
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|
| T |
2576132 |
atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat |
2576071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 18781161 - 18781418
Alignment:
| Q |
1 |
agtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || ||| |
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|
| T |
18781161 |
agtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaacactact |
18781260 |
T |
|
| Q |
101 |
gcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
200 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| || || |||| |
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| T |
18781261 |
gcggcgttgccaaagataaagtcgacggtgccatagatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgata |
18781360 |
T |
|
| Q |
201 |
tggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacc |
258 |
Q |
| |
|
| |||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18781361 |
tagcacaccgatagaagacagagagatcggaggctgatcggagcgccacagcttgacc |
18781418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 12802727 - 12802984
Alignment:
| Q |
1 |
agtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaaccact |
100 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||| ||||||||||| ||||| || | |||||| |||| | | ||| | || ||||||||||| || |
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|
| T |
12802727 |
agtgttttgaaatgggtcatcacgaccttgggccgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttggaaaactacg |
12802826 |
T |
|
| Q |
101 |
gcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgata |
200 |
Q |
| |
|
|| || ||||||||||||||||| ||||||||||||||| | |||| || ||||||||||||||||| ||| |||| || |||||||| || ||| | |
|
|
| T |
12802827 |
gctgcgttgccaaagatgaagtcaacggtgccatagatgtaacattctctgtaaaattgacgttgtgcgtgaaccatgagggtgtcttggtagcctttaa |
12802926 |
T |
|
| Q |
201 |
tggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacc |
258 |
Q |
| |
|
|| ||| || ||||| || || || || |||||||||| |||||||| |||||||| |
|
|
| T |
12802927 |
aggaacaacggtagaagacagataggtcagaggctgatcgaagcgccactgcttgacc |
12802984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 8767130 - 8767056
Alignment:
| Q |
65 |
tttcttgcgaaaatgttacaattttggaaaaccactgcggcattgccaaagatgaagtctacggtgccatagatg |
139 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || || |||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatg |
8767056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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