View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_2 (Length: 571)

Name: NF0790_low_2
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_2
NF0790_low_2
[»] chr4 (5 HSPs)
chr4 (74-341)||(20019207-20019474)
chr4 (375-554)||(20019508-20019687)
chr4 (373-558)||(20015920-20016104)
chr4 (167-265)||(20015651-20015747)
chr4 (274-335)||(20015809-20015870)
[»] chr3 (14 HSPs)
chr3 (413-459)||(1930946-1930992)
chr3 (413-462)||(1936757-1936806)
chr3 (384-449)||(12133326-12133391)
chr3 (413-459)||(1889369-1889415)
chr3 (413-459)||(1897448-1897494)
chr3 (413-459)||(1906894-1906940)
chr3 (418-459)||(2932146-2932187)
chr3 (413-454)||(12218278-12218319)
chr3 (384-453)||(13479809-13479877)
chr3 (422-462)||(23197249-23197289)
chr3 (422-453)||(1438237-1438268)
chr3 (413-459)||(1890835-1890881)
chr3 (418-454)||(2442266-2442302)
chr3 (428-456)||(23239275-23239303)
[»] chr5 (2 HSPs)
chr5 (413-467)||(23644647-23644701)
chr5 (423-456)||(2066863-2066896)
[»] chr6 (1 HSPs)
chr6 (413-453)||(9819606-9819646)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 74 - 341
Target Start/End: Original strand, 20019207 - 20019474
Alignment:
Q  74 agaaataaaccaaatgttcaattattatttgactaaacataactatatcagaaacaaatttgtagtgcaacttgtccaattttttaccaattgcaaaaaa 173  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20019207 agaaataaaccacatgttcaatcattatttgactgaacataactatatcagaaacaaatttgtagtgcaactcgtccaattttttaccaattgcaaaaaa 20019306  T
Q  174 taagtacaatgaaacaaaaaattgagtacaatcaatacattttagggaatatgcatttttgaaagaggaaaggccgcgcaaagtataaaaataatgtaag 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||     
T  20019307 taagtacaatgaaacaaaaaattgagtacaatcaatacattttagggaatatgcatttttgaaagaggaaaggctgcgcaaagtataaaaataatggaat 20019406  T
Q  274 aacaccaattgctcaaacttcaaattaacgacaattaatcaacaataattcatgaaatcaccggtaac 341  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  20019407 aacaccaattgctcaaacttcaaattaaccacaattaatcaacaataatccatgaaatcaccggtaac 20019474  T

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Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 375 - 554
Target Start/End: Original strand, 20019508 - 20019687
Alignment:
Q  375 ggttgtagttaaatctcatgctgaagtgacataccacaacatcctagcattaaaaacaaggtgatatcaaactctcaacacatacttctaggaagttgca 474  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20019508 ggttgtagttaaatctcatgctgaagtgacatagcacaacatcctagcattaaaaacaaggtgatatcaaactctcaacacatacttctaggaagttgca 20019607  T
Q  475 ttcaaacttagtaagcttaaaagttccattaattaaatcgtaaacaaccaaaatccatttgccatttccaatacactgca 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20019608 ttcaaacttagtaagcttaaaagttccattaattaaatcgtaaacaaccaaaatccatttgccatttccaatacactgca 20019687  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 373 - 558
Target Start/End: Original strand, 20015920 - 20016104
Alignment:
Q  373 tcggttgtagttaaatctcatgctgaagtgacataccacaacatcctagcattaaaaacaaggtgatatcaaactctcaacacatacttctaggaagttg 472  Q
    ||||||| ||||||||||||| | ||||||||| |      |||||| ||||| || |||||||||||||||||||||||||||||||||| ||    ||    
T  20015920 tcggttgcagttaaatctcattccgaagtgacaaagtggtgcatcctcgcattgaagacaaggtgatatcaaactctcaacacatacttct-ggtttctg 20016018  T
Q  473 cattcaaacttagtaagcttaaaagttccattaattaaatcgtaaacaaccaaaatccatttgccatttccaatacactgcaacag 558  Q
     ||||||||||||||| |||||||||||||||  |  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20016019 tattcaaacttagtaaacttaaaagttccattcttggaatcgtaaacaaccaaattccatttgccatttccaatacactgcaacag 20016104  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 167 - 265
Target Start/End: Original strand, 20015651 - 20015747
Alignment:
Q  167 caaaaaataagtacaatgaaacaaaaaattgagtacaatcaatacattttagggaatatgcatttttgaaagaggaaaggccgcgcaaagtataaaaat 265  Q
    |||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||  |||||||||||||||||| | |||||||| |||||    
T  20015651 caaaaaataagtacaatggaacaaaaaatcgagtacattcagtacattttagggaatatgca--tttgaaagaggaaaggccacacaaagtatgaaaat 20015747  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 20015809 - 20015870
Alignment:
Q  274 aacaccaattgctcaaacttcaaattaacgacaattaatcaacaataattcatgaaatcacc 335  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  20015809 aacaccaattgctcaaacttcaaattaacgacagttaatcaacaataatccatgaagtcacc 20015870  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 1930946 - 1930992
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaacacatac 459  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||    
T  1930946 acattctagcattaagaacaaggtgatatcaaactctcaacacatac 1930992  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 1936757 - 1936806
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaacacatacttc 462  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||||    
T  1936757 acattctagcattaaaaacaaggtgatatcaaactctcaacgcagacttc 1936806  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 12133391 - 12133326
Alignment:
Q  384 taaatctcatgctgaagtgacataccacaacatcctagcattaaaaacaaggtgatatcaaactct 449  Q
    ||||| ||||||| |||||||||| ||| | |||||| |||||| |||||||||||||||||||||    
T  12133391 taaatttcatgctcaagtgacataacactagatcctaacattaagaacaaggtgatatcaaactct 12133326  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 1889369 - 1889415
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaacacatac 459  Q
    |||| |||||||||| ||||||||||||||||||||||||| |||||    
T  1889369 acattctagcattaagaacaaggtgatatcaaactctcaacgcatac 1889415  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 1897448 - 1897494
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaacacatac 459  Q
    |||| |||||||||| ||||||||||||||||||||||||| |||||    
T  1897448 acattctagcattaagaacaaggtgatatcaaactctcaacgcatac 1897494  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 1906894 - 1906940
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaacacatac 459  Q
    |||| |||||||||| ||||||||||||||||||||||||| |||||    
T  1906894 acattctagcattaagaacaaggtgatatcaaactctcaacgcatac 1906940  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 2932187 - 2932146
Alignment:
Q  418 ctagcattaaaaacaaggtgatatcaaactctcaacacatac 459  Q
    |||||||||| ||||||||||||||||||||||||| |||||    
T  2932187 ctagcattaagaacaaggtgatatcaaactctcaacgcatac 2932146  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 12218319 - 12218278
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaaca 454  Q
    |||||||| |||||| ||||||||||||||||||||||||||    
T  12218319 acatcctaacattaagaacaaggtgatatcaaactctcaaca 12218278  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 13479877 - 13479809
Alignment:
Q  384 taaatctcatgctgaagtgacataccacaacatcctagcattaaaaacaaggtgatatcaaactctcaac 453  Q
    ||||| ||||||| ||||||||||  || |||||||| | |||||||||||| |||||||||||||||||    
T  13479877 taaatttcatgct-aagtgacataggactacatcctatcgttaaaaacaaggcgatatcaaactctcaac 13479809  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 23197289 - 23197249
Alignment:
Q  422 cattaaaaacaaggtgatatcaaactctcaacacatacttc 462  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  23197289 cattagaaacaaggtgatatcaaactctcaacacaaacttc 23197249  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 453
Target Start/End: Complemental strand, 1438268 - 1438237
Alignment:
Q  422 cattaaaaacaaggtgatatcaaactctcaac 453  Q
    ||||||||||||||||||||||||||||||||    
T  1438268 cattaaaaacaaggtgatatcaaactctcaac 1438237  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 459
Target Start/End: Original strand, 1890835 - 1890881
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaacacatac 459  Q
    |||| |||||||||| ||||||| ||||||||||||||||| |||||    
T  1890835 acattctagcattaagaacaaggcgatatcaaactctcaacgcatac 1890881  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 454
Target Start/End: Complemental strand, 2442302 - 2442266
Alignment:
Q  418 ctagcattaaaaacaaggtgatatcaaactctcaaca 454  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  2442302 ctagcattaagaacaaggtgatattaaactctcaaca 2442266  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 456
Target Start/End: Original strand, 23239275 - 23239303
Alignment:
Q  428 aaacaaggtgatatcaaactctcaacaca 456  Q
    |||||||||||||||||||||||||||||    
T  23239275 aaacaaggtgatatcaaactctcaacaca 23239303  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 23644701 - 23644647
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaacacatacttctagga 467  Q
    |||| ||| |||||| ||||||||||||||||||| ||||| || ||||||||||    
T  23644701 acattctaacattaagaacaaggtgatatcaaactttcaacgcagacttctagga 23644647  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Original strand, 2066863 - 2066896
Alignment:
Q  423 attaaaaacaaggtgatatcaaactctcaacaca 456  Q
    |||||||||||| |||||||||||||||||||||    
T  2066863 attaaaaacaagatgatatcaaactctcaacaca 2066896  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 9819606 - 9819646
Alignment:
Q  413 acatcctagcattaaaaacaaggtgatatcaaactctcaac 453  Q
    |||| ||| |||||| |||||||||||||||||||||||||    
T  9819606 acatactaacattaagaacaaggtgatatcaaactctcaac 9819646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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