View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0790_low_20 (Length: 359)
Name: NF0790_low_20
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 123 - 277
Target Start/End: Original strand, 23830056 - 23830210
Alignment:
| Q |
123 |
catgagaatgaaaacaaaataaacaaggacaacaaagaaaagcaaactgcatttgcggatgagcaacgcctatagcatcaacagtcaaaacacgactaag |
222 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23830056 |
catgagaatgaaaacaaaataaacaagaacaacaaagaaaagcaaactgcattcgcggatgagcaacgcctatagcatcaacagtcaaaacacgactaag |
23830155 |
T |
|
| Q |
223 |
ctgacgagcacaacagagtggcgaagtgtctgagaaaaatatactagtactagta |
277 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23830156 |
ctgacgagcacaacagagtggtgaagtgtctgagaaaaatatactagtactagta |
23830210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 23820974 - 23821044
Alignment:
| Q |
207 |
tcaaaacacgactaagctgacgagcacaacagagtggcgaagtgtctgagaaaaatatactagtactagta |
277 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||| |||| |
|
|
| T |
23820974 |
tcaaaacatgactaagctgaggagcacaatggagtggcgaagagtgtgagaaaagtatactagtaccagta |
23821044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6662 times since January 2019
Visitors: 5770