View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_22 (Length: 349)
Name: NF0790_low_22
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 87 - 272
Target Start/End: Complemental strand, 1464210 - 1464025
Alignment:
| Q |
87 |
atcatcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaacataagtcgacaaccttac |
186 |
Q |
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| T |
1464210 |
atcagcaagcggagtatggacaaggtagatatgtacgcggccttatccctgcaaacagataggttatttccaatatttgaacataagtcgacaaccttac |
1464111 |
T |
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| Q |
187 |
agttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaaggaaaataacctaccttgttttccaagatatt |
272 |
Q |
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| T |
1464110 |
agttgcacaaaggcttgtccttatcaacaatgtgacgaaatgataaagtgaaaaagaaaataacctaccttgttttccaagatatt |
1464025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 272
Target Start/End: Complemental strand, 26791884 - 26791741
Alignment:
| Q |
126 |
gccttatccctgcaaacagataggttatttccaatatttgaacataagtcgacaaccttacagttgcacaaaggcttgtccttatcaacaatgtgacgaa |
225 |
Q |
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||||||||||| ||| |||||| |||||||||||||||||||| || ||||||||| |||||| | |||||| |||||||||||| ||||| || |
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| T |
26791884 |
gccttatccctacaagcagatatactatttccaatatttgaacat--gtgaacaaccttagagttgcgccaaggctcgtccttatcaac---gtgaccaa |
26791790 |
T |
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| Q |
226 |
atgataaagtgaaaagga--aaataacctaccttgttttccaagatatt |
272 |
Q |
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| T |
26791789 |
atgataaagcgaaaataaataaaaaatctaccttgttttccaaaatatt |
26791741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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