View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_27 (Length: 334)

Name: NF0790_low_27
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_27
NF0790_low_27
[»] chr2 (4 HSPs)
chr2 (23-222)||(28624338-28624537)
chr2 (112-175)||(2584020-2584083)
chr2 (172-222)||(2583952-2584002)
chr2 (23-55)||(34428794-34428826)
[»] chr3 (4 HSPs)
chr3 (112-172)||(11981856-11981916)
chr3 (112-172)||(18770695-18770755)
chr3 (23-55)||(25109926-25109958)
chr3 (23-55)||(27497888-27497920)
[»] chr8 (4 HSPs)
chr8 (23-55)||(12330496-12330528)
chr8 (23-55)||(26447513-26447545)
chr8 (23-55)||(34985281-34985313)
chr8 (23-55)||(40770687-40770719)
[»] chr7 (4 HSPs)
chr7 (23-55)||(34857677-34857709)
chr7 (23-55)||(44414010-44414042)
chr7 (24-55)||(29141050-29141081)
chr7 (23-55)||(24362258-24362290)
[»] chr4 (4 HSPs)
chr4 (23-55)||(46119695-46119727)
chr4 (23-55)||(46132829-46132861)
chr4 (23-55)||(17800912-17800944)
chr4 (23-55)||(21246639-21246671)
[»] chr5 (2 HSPs)
chr5 (23-54)||(22642214-22642245)
chr5 (23-55)||(24098528-24098560)
[»] chr1 (1 HSPs)
chr1 (23-55)||(25235865-25235897)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 28624338 - 28624537
Alignment:
Q  23 gttttgatttacccc-taataggccaaacaaaaaagtataacattatatcagacaaattctcccacacctagaaaaattaagcttaagacattctactcc 121  Q
    ||||||||||||||| |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28624338 gttttgatttaccccctaatagaccaaacaaaaat-tataacattatatcagacaaattctcccacacctagaaaaattaagcttaagacattctactcc 28624436  T
Q  122 ctaacacacagatttgtttcaccaaagcacatctcaattcacatgccacctagctaatgtactaactggccctccagtgaaagaagatgcaatatagttc 221  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28624437 ctaacacacagatttgttccaccaaagcacatctcaattcacatgccacctagctaatgtactaactggcccttcagtgaaagaagatgcaatatagttc 28624536  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 2584083 - 2584020
Alignment:
Q  112 attctactccctaacacacagatttgtttcaccaaagcacatctcaattcacatgccacctagc 175  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||    
T  2584083 attctactccctgacacacagatcggtttcaccaaagcacatctcaattcacatgtcacctagc 2584020  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 2584002 - 2583952
Alignment:
Q  172 tagctaatgtactaactggccctccagtgaaagaagatgcaatatagttcc 222  Q
    ||||| ||||||||||| |||||  |||||| |||||||||||||||||||    
T  2584002 tagcttatgtactaactagcccttgagtgaatgaagatgcaatatagttcc 2583952  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 34428826 - 34428794
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||| ||||||||||||    
T  34428826 gttttgatttacccctaataagccaaacaaaaa 34428794  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 11981856 - 11981916
Alignment:
Q  112 attctactccctaacacacagatttgtttcaccaaagcacatctcaattcacatgccacct 172  Q
    |||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  11981856 attctactccccgacacacagatcggtttcaccaaagcacatctcaattcacatgccacct 11981916  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 18770755 - 18770695
Alignment:
Q  112 attctactccctaacacacagatttgtttcaccaaagcacatctcaattcacatgccacct 172  Q
    |||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18770755 attctactccccgacacacagatcggtttcaccaaagcacatctcaattcacatgccacct 18770695  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 25109926 - 25109958
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  25109926 gttttgatttacccctaataggccaaacaaaaa 25109958  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 27497888 - 27497920
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    ||||||||||||||||||||||| |||||||||    
T  27497888 gttttgatttacccctaataggctaaacaaaaa 27497920  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 12330528 - 12330496
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  12330528 gttttgatttacccctaataggccaaacaaaaa 12330496  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 26447545 - 26447513
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  26447545 gttttgatttacccctaataggccaaacaaaaa 26447513  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 34985313 - 34985281
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    ||||||||| |||||||||||||||||||||||    
T  34985313 gttttgattcacccctaataggccaaacaaaaa 34985281  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 40770719 - 40770687
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||| ||||||||||||||||    
T  40770719 gttttgatttacccctgataggccaaacaaaaa 40770687  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 34857677 - 34857709
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  34857677 gttttgatttacccctaataggccaaacaaaaa 34857709  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 44414042 - 44414010
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  44414042 gttttgatttacccctaataggccaaacaaaaa 44414010  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 29141050 - 29141081
Alignment:
Q  24 ttttgatttacccctaataggccaaacaaaaa 55  Q
    ||||||||||||||||||||||||||||||||    
T  29141050 ttttgatttacccctaataggccaaacaaaaa 29141081  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 24362258 - 24362290
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    ||||||||||||||||||||| |||||||||||    
T  24362258 gttttgatttacccctaatagaccaaacaaaaa 24362290  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 46119727 - 46119695
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  46119727 gttttgatttacccctaataggccaaacaaaaa 46119695  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 46132861 - 46132829
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  46132861 gttttgatttacccctaataggccaaacaaaaa 46132829  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 17800944 - 17800912
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||||||| ||||||||    
T  17800944 gttttgatttacccctaataggccgaacaaaaa 17800912  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 21246671 - 21246639
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    ||||||||||||| |||||||||||||||||||    
T  21246671 gttttgatttaccactaataggccaaacaaaaa 21246639  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 22642214 - 22642245
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaa 54  Q
    ||||||||||||||||||||||||||||||||    
T  22642214 gttttgatttacccctaataggccaaacaaaa 22642245  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 24098528 - 24098560
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    ||||||||||| |||||||||||||||||||||    
T  24098528 gttttgatttatccctaataggccaaacaaaaa 24098560  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 25235865 - 25235897
Alignment:
Q  23 gttttgatttacccctaataggccaaacaaaaa 55  Q
    |||||||||||||||||||| ||||||||||||    
T  25235865 gttttgatttacccctaataagccaaacaaaaa 25235897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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