View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_3 (Length: 570)
Name: NF0790_low_3
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_3 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 34 - 486
Target Start/End: Complemental strand, 33521438 - 33520986
Alignment:
| Q |
34 |
gagtgagatgaagaattcgacaaagagaacatgaagcacggacttcagcgggcgctgaggatacttatagcagctggagcagttgaggtaggtactcaca |
133 |
Q |
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| T |
33521438 |
gagttagatgaagaattcgacaaagagaacatgaagcacggacttcagcgggcgctgaggatacttatagcagctggagcagttgaggtaggtactcaca |
33521339 |
T |
|
| Q |
134 |
gaagtgatggacagagaattgtttgtagtggaactaatgaaatggaattgaataagttcgtggaatcggtttacgcagcagaaggaccaatgtcacatca |
233 |
Q |
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| T |
33521338 |
gaagtgatggacagagaattgtttgtagtggaactaatgaaatggaattgaataagttcgtggaatcggtttacgcagcagaaggaccaatgtcacatca |
33521239 |
T |
|
| Q |
234 |
agaagcttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgg |
333 |
Q |
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| T |
33521238 |
agaaacttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgg |
33521139 |
T |
|
| Q |
334 |
gaagctgaaggactatttgtgtgtgatgcaagtttgtttccaactgccaaaggtatcaatcccatgataactattcagtctattgcatattgtgttgcca |
433 |
Q |
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| T |
33521138 |
gaagctgaaggactatttgtgtgtgatgcaagtttgtttccaactgccataggtatcaatcccatgataactattcagtctattgcatattgtgttgcca |
33521039 |
T |
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| Q |
434 |
agagaattgcactgattctgagaatgaaatagagtttattgtttctttgttct |
486 |
Q |
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| T |
33521038 |
agagaattgcactgattctgagaatgaaatagagtttattgtttctttgttct |
33520986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 240 - 380
Target Start/End: Original strand, 31321734 - 31321874
Alignment:
| Q |
240 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
339 |
Q |
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||||||| ||||| | |||||||| || |||||||||||||| || ||| | | ||| |||||||| | |||||||||||||| ||| |||||||||| |
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| T |
31321734 |
ttggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
31321833 |
T |
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| Q |
340 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgc |
380 |
Q |
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| T |
31321834 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgc |
31321874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 240 - 380
Target Start/End: Original strand, 31333987 - 31334127
Alignment:
| Q |
240 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
339 |
Q |
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| T |
31333987 |
ttggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
31334086 |
T |
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| Q |
340 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgc |
380 |
Q |
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| T |
31334087 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgc |
31334127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 31321591 - 31321644
Alignment:
| Q |
100 |
atagcagctggagcagttgaggtaggtactcacagaagtgatggacagagaatt |
153 |
Q |
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| T |
31321591 |
atagcagcaggagcagttgaagtaggaacacacagaagtgatggtcagagaatt |
31321644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 31333844 - 31333897
Alignment:
| Q |
100 |
atagcagctggagcagttgaggtaggtactcacagaagtgatggacagagaatt |
153 |
Q |
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| T |
31333844 |
atagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaatt |
31333897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 2080 - 2027
Alignment:
| Q |
100 |
atagcagctggagcagttgaggtaggtactcacagaagtgatggacagagaatt |
153 |
Q |
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| T |
2080 |
atagcagcaggagcagttgaagtaggaacacacagaagtggtggtcagagaatt |
2027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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