View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0790_low_30 (Length: 323)
Name: NF0790_low_30
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 33 - 311
Target Start/End: Complemental strand, 10596138 - 10595860
Alignment:
| Q |
33 |
acatcatcatttggccttttatcatgtaacattttatcctgctcatccaccttaaaattttccggttgtttgttaccataatactctggtggaatccaag |
132 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10596138 |
acatcagcatttggccttttatcatgtaacaatttatcctgctcatccaccttaaaactttccggttgtttgttaccataatactctggttgaatccaag |
10596039 |
T |
|
| Q |
133 |
ccaaagggtatggaaaattcctaaactgaattggaaccatagcatcattctctttcttaccaacatcaggtttttgctcttccaccttcacagatttgtc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10596038 |
ccaaagggtatggaaaattcctaaactgaattggaaccatagcatcattctctttcttaccaacatcaggtttttgctcttccaccttcacagatttgtc |
10595939 |
T |
|
| Q |
233 |
ttccctttggctgcatgaaggattagaacagccacaacaatgatgttcccttggcatatatttatcatactcgtatctc |
311 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10595938 |
ttccttttggctgcatgaatgattagaacagccacaacaatgatgttcccttggcatatatttatcatactcgtatctc |
10595860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7228 times since January 2019
Visitors: 5775