View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0790_low_31 (Length: 321)
Name: NF0790_low_31
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 96 - 267
Target Start/End: Complemental strand, 6398587 - 6398416
Alignment:
| Q |
96 |
caagtttgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatatttt |
195 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6398587 |
caagtttgtgaacctctcccacacctaaacttgaaccacgtaaaaaggtgacaacagagtaaattcaacaggaaatctatcatcatcaacatgatatttt |
6398488 |
T |
|
| Q |
196 |
gacatatcaataannnnnnnncttaaataaagttaaatccttatatatatgttagctaaaacagctggtgcc |
267 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
6398487 |
gacatatcaataattttttttcttaaataaagttaaatccttatatatatgctagctaaaacagctggtgcc |
6398416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 102 - 267
Target Start/End: Original strand, 6397537 - 6397699
Alignment:
| Q |
102 |
tgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatattttgacata |
201 |
Q |
| |
|
||||||||||| || | || |||||||||||| |||||||||||| | ||||||||||||||| ||||| |||||||| ||||| ||||||| |||| | |
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|
| T |
6397537 |
tgtgaacctcttccacgcccaaacttgaaccaagtaaaaaggtgatagaagagtaaattcaacatgaaatttatcatcaccaacaagatatttcgacaaa |
6397636 |
T |
|
| Q |
202 |
tcaataannnnnnnncttaaataaagttaaatccttatatatatgttagctaaaacagctggtgcc |
267 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||| |||| ||||||| ||||||| |
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| T |
6397637 |
tcaataa-ttgttttcttaaataaagataaatcct--tatatatgatagccaaaacagatggtgcc |
6397699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 20046442 - 20046300
Alignment:
| Q |
100 |
tttgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatattttgaca |
199 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||| ||||| ||||| | | ||||||||||||||||||||||||| || |||| |||||||| ||| |
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|
| T |
20046442 |
tttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctatcaccaccaaccggatattttaaca |
20046343 |
T |
|
| Q |
200 |
tatcaataannnnnnnncttaaataaagttaaatccttatatat |
243 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||| |
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|
| T |
20046342 |
gatcaataa-ttgtgttcttaaataaacttaaatccttatatat |
20046300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 26653471 - 26653372
Alignment:
| Q |
100 |
tttgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatattttgaca |
199 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||||| |||||| ||||| |||| ||| ||| | ||||||||||||| || |||||| ||||||||||| |
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|
| T |
26653471 |
tttgtgaacctctcccacacccaaatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaatctatcaccaccaacataatattttgaca |
26653372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 266
Target Start/End: Original strand, 20036403 - 20036562
Alignment:
| Q |
104 |
tgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatattttgacatatc |
203 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| |||||| ||||| ||||||| ||| | ||||| ||||||| || |||||||| ||||||||| ||| |
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|
| T |
20036403 |
tgaacctctcccacacccaaatttgaaccaagtaaaagggtgattcaagagtaacttctaaaggaagtctatcaccaccaacatgacattttgacaaatc |
20036502 |
T |
|
| Q |
204 |
aataannnnnnnncttaaataaagttaaatccttatatatatgttagctaaaacagctggtgc |
266 |
Q |
| |
|
|| || |||||| ||||||||||||||||||| | ||||||||||||| ||||| |
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|
| T |
20036503 |
aacaa-ttgttttcttaaacaaagttaaatccttatataga--ctagctaaaacagcaggtgc |
20036562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 267
Target Start/End: Complemental strand, 19956283 - 19956242
Alignment:
| Q |
224 |
aaagttaaatccttatatatatgttagctaaaacagctggtgcc |
267 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
19956283 |
aaagttaaatccttatatat--gctagctaaaacagctggtgcc |
19956242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 12579884 - 12579985
Alignment:
| Q |
98 |
agtttgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatattttga |
197 |
Q |
| |
|
|||||||||||||||||| | | |||||| | ||| |||||||||||| |||||||||| ||||||| || |||||||| ||||| |||||||||| |
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|
| T |
12579884 |
agtttgtgaacctctcccgtatccaaacttaagccaagtaaaaaggtgatggaagagtaaattaaacaggatatatatcatcaccaacaagatattttga |
12579983 |
T |
|
| Q |
198 |
ca |
199 |
Q |
| |
|
|| |
|
|
| T |
12579984 |
ca |
12579985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 12495788 - 12495889
Alignment:
| Q |
98 |
agtttgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatattttga |
197 |
Q |
| |
|
|||||||||||||||||| | | |||||| | ||| ||||||||||| | |||||||||| || |||| || |||||||| ||||| |||||||||| |
|
|
| T |
12495788 |
agtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaaattaaataggatatatatcatcaccaacaagatattttga |
12495887 |
T |
|
| Q |
198 |
ca |
199 |
Q |
| |
|
|| |
|
|
| T |
12495888 |
ca |
12495889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 12497531 - 12497420
Alignment:
| Q |
96 |
caagtttgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatatttt |
195 |
Q |
| |
|
|||||||| || |||||||| ||| |||| ||||||| |||||||||||| | | |||||||||||||| |||| ||| |||| ||| | ||| |||| |
|
|
| T |
12497531 |
caagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatattatcaccaataagatgtttt |
12497433 |
T |
|
| Q |
196 |
gacatatcaataa |
208 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
12497432 |
gacagatcaataa |
12497420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 12521396 - 12521285
Alignment:
| Q |
96 |
caagtttgtgaacctctccctcacctaaacttgaaccacgtaaaaaggtgacaatagagtaaattcaacaggaaatctatcatcatcaacatgatatttt |
195 |
Q |
| |
|
|||||||| || |||||||| ||| |||| ||||||| |||||||||||| | | |||||||||||||| |||| ||| |||| ||| | ||| |||| |
|
|
| T |
12521396 |
caagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaatatattatcaccaataagatgtttt |
12521298 |
T |
|
| Q |
196 |
gacatatcaataa |
208 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
12521297 |
gacagatcaataa |
12521285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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