View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0790_low_37 (Length: 294)
Name: NF0790_low_37
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 4084295 - 4084033
Alignment:
| Q |
29 |
aagaagaccataaaaattactatgttcattcattgttattgtttctctattaaaaatcc----ctttctagtggctaagttatttttagttggatctgga |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4084295 |
aagaagaccataaaaattactatgttcattcattgttattgcttctctattaaaaatccatggctttctagtggctaagttatttttagttggatctgga |
4084196 |
T |
|
| Q |
125 |
tttgaagaattatgagtctgtaattgagaaaatggaaaccgttccagagagagaaaacgaaggggtagggatgaagatattggtagtctaaaacaaagga |
224 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4084195 |
tttgaagaattatgagtctataattgagaaaatcgaaagcgttccagagagagaaaacgaaggggtagggatgaagatattggcagtctaaaacaaagga |
4084096 |
T |
|
| Q |
225 |
aagtgtgcacagcttaatctagtccattcaatttaatcaaatgtttaatattagttcatctca |
287 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| | ||||||||||| ||||| |
|
|
| T |
4084095 |
aagtgtgcacagcttaatctggtccattcattttaatcaaatggtcaatattagttcctctca |
4084033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 281
Target Start/End: Original strand, 10951795 - 10952050
Alignment:
| Q |
30 |
agaagaccataaaaattactatgttcattcattgttattgtttctctattaaaaatcc----ctttctagtggctaagttatttttagttggatctggat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10951795 |
agaagaccataaaaattactatgttcattcattgttattgtttctctattaaaaatccatggctttctagtggctaagttatttttagttggatctggat |
10951894 |
T |
|
| Q |
126 |
ttgaagaattatgagtctgtaattgagaaaatggaaaccgttccagagagagaaaacgaaggggtagggatgaagatattggtagtctaaaacaaaggaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10951895 |
ttgaagaattatgagtctgtaattgagaaaatcgaaagcgttccggagagagaaaacgaaggggtagggatgaagatattggcagtctaaaacaaaggaa |
10951994 |
T |
|
| Q |
226 |
agtgtgcacagcttaatctagtccattcaatttaatcaaatgtttaatattagttc |
281 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||| | ||||||||||| |
|
|
| T |
10951995 |
agtgtgcacagcttaatctggtccattcaatttaatttaatggtcaatattagttc |
10952050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 25593671 - 25593402
Alignment:
| Q |
29 |
aagaagaccataaaaattactatgttcattcattgttattgttt--ctctattaaaaatcc----ctttctagtggctaagttatttttagttggatctg |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||| |||| || |
|
|
| T |
25593671 |
aagaagaccataaaa-ttactatgttcattcattgttgttgttttactctattaaaaatccaaggctttctagtt-ctaagttatttttagtcggat-tg |
25593575 |
T |
|
| Q |
123 |
gatttgaagaattatgagtctgtaattgagaaaatggaaaccgttccagagagagaaaacgaag-----gggt---agggatgaagatattggtagtcta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||| ||||| ||| |||||||||||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
25593574 |
gatttgaagaattatgagtctgtaattgacaaaatcaaaattgttcctgagggagaaaacgaaggcgcagggttgcagggatgaagatgttgctagtcta |
25593475 |
T |
|
| Q |
215 |
aaacaaaggaaagtgtgcacagcttaatctagtccattcaatttaatcaaatgtttaatattagttcatctca |
287 |
Q |
| |
|
|||||| ||||||||| ||| |||||||| |||||||||||||||| |||| | |||||| |||| ||||| |
|
|
| T |
25593474 |
caacaaatgaaagtgtgaacaacttaatctgatccattcaatttaatctaatggtcaatatttgttcctctca |
25593402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5415 times since January 2019
Visitors: 5757