View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_4 (Length: 569)
Name: NF0790_low_4
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 29 - 381
Target Start/End: Original strand, 46455335 - 46455687
Alignment:
| Q |
29 |
aatctctattgcacataacaagcttacaggttctgttccaaaaagtatctgtagtttgcctaatttggcgaactttacattctcctataactattttaac |
128 |
Q |
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| T |
46455335 |
aatctctattgcacataacaagcttacaggttctgttccaaaaagtatctgtagtttgcctaatttggcgaactttacattctcctataactattttaac |
46455434 |
T |
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| Q |
129 |
gtcgaggaagaaggttgtgtgcctcctggaaaagaaattgagttggaagacatggataattgtatacctaataggccaaaacaaaagacaacaaatgatt |
228 |
Q |
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| T |
46455435 |
gtcgaggaagaaggttgtgtgcctcctggaaaagaaattgagttggaagacatggataattgtatacctaataggccaaaacaaaagacaacaaatgatt |
46455534 |
T |
|
| Q |
229 |
gcaatctggttataagcaaacctgtggattgcaccaagggattatgtagtagtaaaccatctcaatccaattctccttcaaatcctccaactgagaaacc |
328 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46455535 |
gcaatgtggttataagcaaacctgtggattgcaccaagggattatgtagtagtaaaccatctcaatccaattctccttcaaatcctccaactgagaaacc |
46455634 |
T |
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| Q |
329 |
aacaccttcagtgcctaagccacaaccgcaacctacaccttcgcaaaccccaa |
381 |
Q |
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| T |
46455635 |
aacaccttcagtgcctaagccacaaccgcaacctacaccttcgcaaaccccaa |
46455687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 450 - 557
Target Start/End: Original strand, 46455756 - 46455863
Alignment:
| Q |
450 |
ccttctacacctcaagcagaaccaccaattgaggatgatcctcataatgaagcacccaaaagaagaacacgatcaccgccaccaccagttcaatccccac |
549 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
46455756 |
ccttctacacctgaagcagaaccaccaattgaggatgatcctcataatgaagcacccaaaagaagaacacgatcaccgccgccaccagttcaatcctcac |
46455855 |
T |
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| Q |
550 |
cacctcct |
557 |
Q |
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|||||||| |
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| T |
46455856 |
cacctcct |
46455863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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