View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_42 (Length: 270)
Name: NF0790_low_42
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 19856943 - 19857199
Alignment:
| Q |
4 |
catcaaagaaatcataacattttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856943 |
catcaaagaaatcataacattttccaaacacagtcatcatcacattattaagtgaaccaaaatgaagaacttttttcacctcaacactacccatatcacc |
19857042 |
T |
|
| Q |
104 |
catcaaaaacttaatcctctcaaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaa |
203 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19857043 |
catcaaaaacttaatcctctccaccattttcaaaccaacctcactcctaaaaccttcaaacccattaatcctcctaggacaaaacaaatgggttgaagaa |
19857142 |
T |
|
| Q |
204 |
atcctcctcaaattcctccagtactctccatatggagcaaaccccattgccctatga |
260 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19857143 |
atcctcctcaaattcctccagtactctccatacggagcaaaccccattgccctatga |
19857199 |
T |
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