View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0790_low_43 (Length: 268)
Name: NF0790_low_43
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 43487264 - 43487453
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43487264 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
43487363 |
T |
|
| Q |
133 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43487364 |
gccctcaacacaaccatgctaagatccatttgattattctcatccacacgaaaattgaagcgcttgaagttacttccacatttcacctgt |
43487453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 43465504 - 43465691
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
| |
|
||||| |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||| |
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| T |
43465504 |
atcattatcatccacaagattcaccaagtcgccatcttcatcaacatatttcagactgaaatttgcatccgcattaaaattgaaattagaccgtatctta |
43465603 |
T |
|
| Q |
133 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacct |
220 |
Q |
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| T |
43465604 |
gccctcaactcaaccatgtcaagattcattacattattctcatccacacgaacattaaagcgcttgaaggtatttccaaatttcacct |
43465691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 222
Target Start/End: Original strand, 43459806 - 43459995
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
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|||||||||||| ||||||| |||| |||| ||||||||||||||||| ||| ||||||||||| || | | |||||||| ||| |||||||||||||| |
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| T |
43459806 |
atcatcatcatctacaagattcaccaagtcgccctcttcatcaacatatctcaaactgaaatttgcattatcagtaaaattaaaatcagaccgtatctta |
43459905 |
T |
|
| Q |
133 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctgt |
222 |
Q |
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||||||| | ||||||| ||||||||||| ||||||||||||| |||| || |||||||||||||||| || || || ||||||||||| |
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| T |
43459906 |
gccctcagctcaaccatcttaagatccattcgattattctcatccacactaacattgaagcgcttgaaggtattttcaaatttcacctgt |
43459995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 43478938 - 43479089
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||| ||| || ||||| ||||| |||||||||||| |
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| T |
43478938 |
atcatcatcatccacaagattcaccaagtcaccctcttcatcaacatatctcagactgaaatttacatctgcattaaaaatgaaatatgaccgtatctta |
43479037 |
T |
|
| Q |
133 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaa |
184 |
Q |
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||||||||| |||||||| ||| || | |||||||||||||||| ||||||| |
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| T |
43479038 |
gccctcaactcaaccatgttaatattcctttgattattctcatccacacgaa |
43479089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 43494252 - 43494437
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||| || | |||||||||||| ||||||||||||| |
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| T |
43494252 |
atcatcatcatccacaagattcaccaagtcaccctcttcatcaacatatctcagaatgaaatttgcatgac---taaaattgaaaatagaccgtatctta |
43494348 |
T |
|
| Q |
133 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgcttgaagttacttccacatttcacctg |
221 |
Q |
| |
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||| |||| ||||||| ||||||||| || |||||||||||| ||| ||| | |||| || ||||| || ||||| |||||||||| |
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| T |
43494349 |
gccttcaaactaaccatgttaagatccacttcattattctcatcaacatgaacactgaaacgtctgaaggtatttccatatttcacctg |
43494437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 176
Target Start/End: Original strand, 43467875 - 43468018
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
| |
|
||||| |||||||||||||| |||| ||| | |||||||||||||| ||||| |||| |||| || ||| ||||||||||||||||| | ||||||| |
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| T |
43467875 |
atcattatcatccacaagattcacctgctcgccatcttcatcaacatagctcagaatgaagtttgcattagcagtaaaattgaaaacagaacatatctta |
43467974 |
T |
|
| Q |
133 |
gccctcaacacaaccatgctaagatccatttgattattctcatc |
176 |
Q |
| |
|
|||||||| |||||||| |||| ||||| |||||||| ||||| |
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| T |
43467975 |
tccctcaacccaaccatgttaaggtccatgtgattattgtcatc |
43468018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 43452644 - 43452806
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
| |
|
|||||||||||||||||||| |||| |||| | || |||||||||||| ||||| | | ||| |||||| | |||||| ||| ||| | ||||||| |
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|
| T |
43452644 |
atcatcatcatccacaagattcaccaagtcgccatcctcatcaacatatctcagagttagattcacatcagcagggaaattgtaaatagaacatatctta |
43452743 |
T |
|
| Q |
133 |
gccctcaacacaaccatgctaagatccatttgattattctcatctacacgaaaattgaagcgc |
195 |
Q |
| |
|
| ||||||| |||||||| ||||||||| |||| |||||||| ||||||| |||||||||| |
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|
| T |
43452744 |
gacctcaacccaaccatgttaagatccaaccgattgttctcatccacacgaacattgaagcgc |
43452806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 43475427 - 43475534
Alignment:
| Q |
33 |
atcatcatcatccacaagatacaccgtgtcgtcctcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatctta |
132 |
Q |
| |
|
||||| |||||||||||||| |||| | ||| | |||||||||||||| ||||| |||| |||| |||| | ||||||| |||| ||||| ||||||| |
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| T |
43475427 |
atcattatcatccacaagattcaccatctcggcatcttcatcaacatagctcagagtgaattttgcatcatcagtaaaataaaaaatagaccttatctta |
43475526 |
T |
|
| Q |
133 |
gccctcaa |
140 |
Q |
| |
|
|||||||| |
|
|
| T |
43475527 |
gccctcaa |
43475534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 43482674 - 43482802
Alignment:
| Q |
67 |
tcttcatcaacatatttcagactgaaatttgtatcagcggtaaaattgaaaacagaccgtatcttagccctcaacacaaccatgctaagatccatttgat |
166 |
Q |
| |
|
|||||||||||||| ||||| |||| ||| |||| | ||||||| |||| ||||| |||||||||||||||| ||||||| || ||| ||||||| |
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|
| T |
43482674 |
tcttcatcaacatagctcagagtgaattttacatcatcagtaaaatcaaaaatagaccttatcttagccctcaacctaaccatgtcaatatcaatttgat |
43482773 |
T |
|
| Q |
167 |
tattctcatctacacgaaaattgaagcgc |
195 |
Q |
| |
|
|||| ||||| ||| || |||||||||| |
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|
| T |
43482774 |
tattgtcatccacagaaacattgaagcgc |
43482802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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