View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_48 (Length: 241)

Name: NF0790_low_48
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_48
NF0790_low_48
[»] chr4 (1 HSPs)
chr4 (13-241)||(41705132-41705359)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 41705132 - 41705359
Alignment:
Q  13 atcatcacacaccactccatctacaaattcaaaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatg 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||        |||||||  ||||||||||||||    
T  41705132 atcatcacacaccactccatctacaaattcaaaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatg 41705228  T
Q  111 gcttctcccctgttatttctcctcatcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatag 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41705229 gcttctcccctgttatttctcctcctcatcacactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatag 41705328  T
Q  211 aattcaacacaacccaccacctccttaaatc 241  Q
    |||||||||||||||||||||||||||||||    
T  41705329 aattcaacacaacccaccacctccttaaatc 41705359  T

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