View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_5 (Length: 530)
Name: NF0790_low_5
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 126 - 301
Target Start/End: Original strand, 10010094 - 10010269
Alignment:
| Q |
126 |
atgacaacgtaaaaaagcggcacaaaactttaaaaagtcctttaaatagtaaagtaacatcctgaccaactcccttgctgcattattttacagatatgag |
225 |
Q |
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| T |
10010094 |
atgacaacgtaaaaaagcggcacaaaactttaaaaagtcctttaaatagtaaagtaacatcctgaccaactcccttgctgcattattttacagatatgag |
10010193 |
T |
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| Q |
226 |
atgtgatattttgtcttcattccaaaattactccaagaacaccaagctacctgtagcagagcgagaagacaatttc |
301 |
Q |
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| T |
10010194 |
atgtgatattttgtcttcattccaaaattactccaagaacaccaagctacctgtagcagagcgagaagacaatttc |
10010269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 321 - 515
Target Start/End: Original strand, 10010293 - 10010487
Alignment:
| Q |
321 |
ggacataaactataccaatttaagctcaaatcaattcgatagcaatatattttaccggattctattcaacctatataaggacaaaaataaaagcaataac |
420 |
Q |
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||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
10010293 |
ggacataaactatactaatttaagctcaaatcaatttgacagcaatatattttaccggattctattcaacctatataaggataaaaataaaagcaattac |
10010392 |
T |
|
| Q |
421 |
cgtgcatcctatgtaactaaatttgttaattgcatgttacacatttattgtagaaaaaggagaacagaagccgaatccaatcgacctatatatct |
515 |
Q |
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| T |
10010393 |
cgtgcatcctatgtaactaaaattgttaattgcatgttacacatttattgtagaaaaaggagaacagaagccgattccaatcaacctatatatct |
10010487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 126 - 264
Target Start/End: Complemental strand, 47248848 - 47248710
Alignment:
| Q |
126 |
atgacaacgtaaaaaagcggcacaaaactttaaaaagtcctttaaatagtaaagtaacatcctgaccaactcccttgctgcattattttacagatatgag |
225 |
Q |
| |
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||||||| ||||||||||||| |||||| ||||| ||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||||| || || |
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| T |
47248848 |
atgacaatttaaaaaagcggcagcaaacttgaaaaattcctttaaatagtaaagcaacattctgaccaactcctttgctgcataattttacaggtaaaag |
47248749 |
T |
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| Q |
226 |
atgtgatattttgtcttcattccaaaattactccaagaa |
264 |
Q |
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|||||| ||||| ||||| ||||||| |||| |||||| |
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| T |
47248748 |
ttgtgatcttttgccttcaatccaaaactacttcaagaa |
47248710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 126 - 252
Target Start/End: Original strand, 42310511 - 42310637
Alignment:
| Q |
126 |
atgacaacgtaaaaaagcggcacaaaactttaaaaagtcctttaaatagtaaagtaacatcctgaccaactcccttgctgcattattttacagatatgag |
225 |
Q |
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||||||| ||||||||||||||| |||||| ||||| ||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||| || || |
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| T |
42310511 |
atgacaatgtaaaaaagcggcaccaaacttgaaaaattcctttaaatagtaaagtaacattctgaccacctcctttgctgcataattttacaggtagaag |
42310610 |
T |
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| Q |
226 |
atgtgatattttgtcttcattccaaaa |
252 |
Q |
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|||||||||||| ||||| ||||||| |
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| T |
42310611 |
ttgtgatattttgccttcaatccaaaa |
42310637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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