View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_50 (Length: 227)
Name: NF0790_low_50
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 42324876 - 42324917
Alignment:
| Q |
108 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatct |
149 |
Q |
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| T |
42324876 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatct |
42324917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 42324804 - 42324848
Alignment:
| Q |
46 |
ctgtgtgttttacaatttcaatatgtcattatattctctctcatc |
90 |
Q |
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| T |
42324804 |
ctgtgtgtgatacaatttcaatatgtcattatattctctctcatc |
42324848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42324782 - 42324749
Alignment:
| Q |
1 |
agataccaaagccaaatataggtatacacaggtt |
34 |
Q |
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| T |
42324782 |
agataccaaagccaaatataggtatacacaggtt |
42324749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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