View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_52 (Length: 223)
Name: NF0790_low_52
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 41675001 - 41674861
Alignment:
| Q |
1 |
atataagattttaactgcctttttgagaaaagcaaaggttttaaagtgtatctacttagtggccaccaataaaaacctcatcacaaagcagttgttaatt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41675001 |
atataagattgtaactgcctttttgagaaaagcaaaggttttatagtgtctctacttagtggccaccaataaaaacctcatcacaaaacagttgttaatt |
41674902 |
T |
|
| Q |
101 |
gtggattcaataacagtttaattccagatatatagtataat |
141 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
41674901 |
gtggattcaataacagattaattccagatatatagtataat |
41674861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6276532 - 6276670
Alignment:
| Q |
1 |
atataagattttaactgcctttttgagaaaagcaaaggttttaaagtgtatctacttagtggccaccaata-aaaacctcatcacaaagcagttgttaat |
99 |
Q |
| |
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|||||||||| |||||||||||| |||||||||| | ||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
6276532 |
atataagattgtaactgccttttcaagaaaagcaatgattttaaagt--atctaccg-gtggccaccaatataaaacctcatcacaaagcaggtgttaat |
6276628 |
T |
|
| Q |
100 |
tgtggattcaataacagtttaattccagatatatagtataat |
141 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
6276629 |
tgtggattcaataacaaattaattccagatatatagtataat |
6276670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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