View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_53 (Length: 217)
Name: NF0790_low_53
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38299684 - 38299813
Alignment:
| Q |
1 |
aagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaagcaacagctagggctactatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38299684 |
aagatattgttttgcctcctcctgacgttgtcgagctttattttgaggatttgtacactgaagagaaactcaatattaaacaacagct--ggctactatt |
38299781 |
T |
|
| Q |
101 |
cctaataggatatctttaacttttgatctgtg |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38299782 |
cctaataggatatctttaacttttgatctgtg |
38299813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 38305691 - 38305732
Alignment:
| Q |
91 |
ggctactattcctaataggatatctttaacttttgatctgtg |
132 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
38305691 |
ggctaccattcctaataggatatctttaacttttgatttgtg |
38305732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 38320517 - 38320558
Alignment:
| Q |
91 |
ggctactattcctaataggatatctttaacttttgatctgtg |
132 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||| |
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| T |
38320517 |
ggctaccattcctaataggatatctttaactgttgatctgtg |
38320558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 38316426 - 38316460
Alignment:
| Q |
98 |
attcctaataggatatctttaacttttgatctgtg |
132 |
Q |
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|
|||||||||||||||||||||||||||||| |||| |
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|
| T |
38316426 |
attcctaataggatatctttaacttttgatttgtg |
38316460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 38325264 - 38325305
Alignment:
| Q |
91 |
ggctactattcctaataggatatctttaacttttgatctgtg |
132 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||| |||| |
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|
| T |
38325264 |
ggctaccattcctaatagggtatctttaacttttgatttgtg |
38325305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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