View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_54 (Length: 216)
Name: NF0790_low_54
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_54 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 4192 - 3998
Alignment:
| Q |
9 |
caacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatga |
108 |
Q |
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| T |
4192 |
caacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatga |
4093 |
T |
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| Q |
109 |
tcccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccaacatttcactcacaggttct |
204 |
Q |
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| T |
4092 |
t-ccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
3998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 3687 - 3622
Alignment:
| Q |
127 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccaacatttc |
191 |
Q |
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| T |
3687 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttc |
3622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 35774278 - 35774468
Alignment:
| Q |
9 |
caacaaaatacatagaccata--ctaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgat |
106 |
Q |
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| T |
35774278 |
caacaaaatatatagaccatatactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgat |
35774377 |
T |
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| Q |
107 |
gatcccctcaaattag------ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccaacattt |
190 |
Q |
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| T |
35774378 |
gatccacccaaattagtagcttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcattt |
35774468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 35848122 - 35848250
Alignment:
| Q |
70 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcac-tttgtctcaat |
162 |
Q |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
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| Q |
163 |
tcttcttccttttctccttccaacatttc |
191 |
Q |
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| T |
35848222 |
tcttttcctttttctccttccatcatttc |
35848250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 191
Target Start/End: Complemental strand, 141 - 13
Alignment:
| Q |
70 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcac-tttgtctcaat |
162 |
Q |
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| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
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| Q |
163 |
tcttcttccttttctccttccaacatttc |
191 |
Q |
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| T |
41 |
tcttttcctttttctccttccatcatttc |
13 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 551 - 485
Alignment:
| Q |
126 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccaacatttc |
191 |
Q |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttc |
485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 551 - 485
Alignment:
| Q |
126 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccaacatttc |
191 |
Q |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttc |
485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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