View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_58 (Length: 213)
Name: NF0790_low_58
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 13852463 - 13852311
Alignment:
| Q |
1 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttagg |
100 |
Q |
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| T |
13852463 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttagg |
13852364 |
T |
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| Q |
101 |
ttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataa |
153 |
Q |
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| T |
13852363 |
ttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataa |
13852311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 13856342 - 13856190
Alignment:
| Q |
1 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13856342 |
agctgcataaaatgatgctttcttttcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaag |
13856243 |
T |
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| Q |
101 |
ttagataagaaagagcaatagaatgttgctactcttccatcttgccagtataa |
153 |
Q |
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| T |
13856242 |
ttagataagaaagagcaatagaatgttgctactcttccatcttcccaatataa |
13856190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 43865385 - 43865492
Alignment:
| Q |
26 |
tcttcataagggatgataaaatcatgaacatgaagtgttccttttgtcccaacagcagttatatccattgttaggttagataagaaagagcaatagaatg |
125 |
Q |
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||||||||||| || |||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| | ||| | |||||||| |||| |||| |
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| T |
43865385 |
tcttcataaggaataataaaatcatgaacatgaagagttccttttgttccaatagctgttatatccattgtcaagtttgccaagaaagaacaatgaaatg |
43865484 |
T |
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| Q |
126 |
ttgctact |
133 |
Q |
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| T |
43865485 |
tagctact |
43865492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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