View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0790_low_6 (Length: 506)
Name: NF0790_low_6
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 72 - 496
Target Start/End: Complemental strand, 37216784 - 37216360
Alignment:
| Q |
72 |
atctccacacaaatggtaagcatccatgttcataagcatgcgacttccacagagatggtgaagttgcaaatatgttctgtaggaccaggcctttctctct |
171 |
Q |
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| T |
37216784 |
atctccacacaaatggtaagcatccatgttcataagcatgcgacttccacagagatggtgaagttgcaaatatgttctgtaggaccaggcctttctctct |
37216685 |
T |
|
| Q |
172 |
agacaccattcaaatatatgttttaaatagaactgggaccccatgtaccatatcatgcattcaatacaggtagaccacaaaataggttgtattgtagcaa |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37216684 |
agacaccattcaaatatatgttttaaatagaactgggaccccatgtaccatatcatgcattcaatacaggtagaccacaaaataggttgtattttagcaa |
37216585 |
T |
|
| Q |
272 |
gtttttcatcagaagatagatggataatacatgctccatcaatcccacatctacctttttgtttgctcttcttaatatacttaatgctatggataatatt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37216584 |
gtttttcatcagaagatagatggataatacatgctccatcaatcccacatctacctttttgtttgctcttcttaatatacttaatgctatgggtaatatt |
37216485 |
T |
|
| Q |
372 |
ttactaaaacttgctagtattattctcnnnnnnnatgagacttcttttataaacaaatgtttaagttgaaattaattctagtttaactaataatcttgta |
471 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37216484 |
ttactaaaacttgctagtattattctctttttttatgagacttcttttataaacaaatgtttaagttgaaattaattctagtttaactaataatcttgta |
37216385 |
T |
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| Q |
472 |
gtaaagtattggaaatgtgcctttg |
496 |
Q |
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| T |
37216384 |
gtaaagtattggaaatgtgcctttg |
37216360 |
T |
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