View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_7 (Length: 496)

Name: NF0790_low_7
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_7
NF0790_low_7
[»] chr3 (3 HSPs)
chr3 (11-468)||(39030326-39030783)
chr3 (11-463)||(37862805-37863257)
chr3 (11-468)||(37858774-37859231)
[»] chr5 (5 HSPs)
chr5 (63-466)||(1478306-1478709)
chr5 (348-466)||(1482785-1482903)
chr5 (342-410)||(1487256-1487324)
chr5 (319-409)||(1509686-1509776)
chr5 (342-406)||(1492754-1492818)
[»] chr8 (2 HSPs)
chr8 (59-230)||(35251114-35251292)
chr8 (357-451)||(35251412-35251506)
[»] chr7 (3 HSPs)
chr7 (105-226)||(5310746-5310867)
chr7 (109-226)||(5289349-5289466)
chr7 (60-226)||(5302800-5302966)
[»] chr1 (3 HSPs)
chr1 (348-409)||(44129166-44129227)
chr1 (348-409)||(44133371-44133432)
chr1 (348-409)||(44141793-44141854)


Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 39030326 - 39030783
Alignment:
Q  11 caaaggtgcccgtgtgttgatggtttgttcagagattagggtatttaattttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattg 110  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030326 caaaggtgcccgtgtgttgatggttagttcagagattagggtatttaattttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattg 39030425  T
Q  111 tttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030426 tttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattc 39030525  T
Q  211 cagatagtgaaggagctattaaagctcacactagagaagcaggactaacattacatatcatcaaagatgttcctgacctcatctcaaagaacattgagaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030526 cagatagtgaaggagctattaaagctcacactagagaagcaggactaacattacatatcatcaaagatgttcctgacctcatctcaaagaacattgagaa 39030625  T
Q  311 aactcttgttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa 410  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030626 aactcttgttgaggcctttcaacctttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa 39030725  T
Q  411 gccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttagtgagt 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39030726 gccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttagtgagt 39030783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 463
Target Start/End: Complemental strand, 37863257 - 37862805
Alignment:
Q  11 caaaggtgcccgtgtgttgatggtttgttcagagattagggtatttaattttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattg 110  Q
    |||||| || ||||| ||| |||||||||| ||||| |  | | ||| ||| |||||||||||||||||| |||||||||||||| |||| | |||||||    
T  37863257 caaaggcgctcgtgttttggtggtttgttcggagatcactgcagttactttccgtggacctagtgatactcatcttgatagtcttgtggggcaggcattg 37863158  T
Q  111 tttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattc 210  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||    
T  37863157 tttggagatggtgcagcagctgtgattgttggttcagatccgttgccagaagttgagaagcctttgtttgaattggtttggactgcacaaacaatcgttc 37863058  T
Q  211 cagatagtgaaggagctattaaagctcacactagagaagcaggactaacattacatatcatcaaagatgttcctgacctcatctcaaagaacattgagaa 310  Q
    |||||||||||||||||||| | | ||||  | ||||||||||||| ||||| ||| || |||| |||||||||| |||  |||||||||||||||||||    
T  37863057 cagatagtgaaggagctattgatggtcaccttcgagaagcaggactgacattccatctcctcaaggatgttcctggccttgtctcaaagaacattgagaa 37862958  T
Q  311 aactcttgttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa 410  Q
    | ||||||||||||| |||||  ||||||||||||| ||||||||||| || |||||||| || |||||||| |||| ||||||||||||||||||||||    
T  37862957 agctcttgttgaggcatttcagcctttgaatatctcggattacaattccatcttttggatcgcgcacccaggtggaccagcaattcttgaccaagttgaa 37862858  T
Q  411 gccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttag 463  Q
      ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37862857 ctcaaattaggcttaaagccagagaaaatgcaagccactcgacatgtacttag 37862805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 468
Target Start/End: Complemental strand, 37859231 - 37858774
Alignment:
Q  11 caaaggtgcccgtgtgttgatggtttgttcagagattagggtatttaattttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattg 110  Q
    ||||||||| ||||||||| | |||||||||||||| |  | | ||| ||| |||||||| ||||| ||| |||||||||| ||| |||| |  ||||||    
T  37859231 caaaggtgctcgtgtgttggtagtttgttcagagataactgcagttactttccgtggacccagtgacactcatcttgatagccttgtggggcaagcattg 37859132  T
Q  111 tttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattc 210  Q
    |||||||||||||| ||||||||||| || ||||||||||| || ||| |||||||||| || ||||||||||||||||||||||||||||| ||| |||    
T  37859131 tttggagatggtgcagcagctgtgatcgtaggttcagacccattaccacaagttgagaaacccttgtttgaattggtatggactgcacaaacgatccttc 37859032  T
Q  211 cagatagtgaaggagctattaaagctcacactagagaagcaggactaacattacatatcatcaaagatgttcctgacctcatctcaaagaacattgagaa 310  Q
    |||||||||||||||| ||| | | ||||  | | ||||  || || ||||| ||| || |||| ||||||||||  || ||||||||||||||||||||    
T  37859031 cagatagtgaaggagcaattgacggtcaccttcgtgaagtcgggcttacattccatctcctcaaggatgttcctggtcttatctcaaagaacattgagaa 37858932  T
Q  311 aactcttgttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa 410  Q
    | |||||| ||||||||||||| ||||   |||||| ||||||||||| || |||||||| |||||||| || |||| ||||||||| |||||||| |||    
T  37858931 agctcttgctgaggcctttcaacctttaggtatctctgattacaattccatcttttggatcgcacaccctggtggaccagcaattctggaccaagtggaa 37858832  T
Q  411 gccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtacttagtgagt 468  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||    
T  37858831 gccaaattaagcttaaagccagagaaaatgcaagccactcgacatgtgcttagcgagt 37858774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 63 - 466
Target Start/End: Original strand, 1478306 - 1478709
Alignment:
Q  63 cgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaag 162  Q
    ||||| |||||||||||| || | || |||||| | ||||  ||| | |||||||||||||| || ||  | ||||||||||| |||||  | ||||||     
T  1478306 cgtggtcctagtgatactcatttggacagtcttgttggacaagcactatttggagatggtgctgctgcactcattgttggttctgacccaataccagaaa 1478405  T
Q  163 ttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagctattaaagctcacactagagaagcaggactaacatt 262  Q
    ||||||| ||| | |||||  |||| |||||||||||||| ||   |||||| ||||| ||||| ||| | | ||||  | | ||||| || ||||||||    
T  1478406 ttgagaaacctatatttgagatggtttggactgcacaaacaattgctccagacagtgagggagccattgatggtcaccttcgtgaagctggtctaacatt 1478505  T
Q  263 acatatcatcaaagatgttcctgacctcatctcaaagaacattgagaaaactcttgttgaggcctttcaaactttgaatatctccgattacaattcaatt 362  Q
     ||  |  | |||||||||||||   |  | |||||||||||||| ||| |  | || ||||| || ||| | || || ||||| ||||| ||||||||     
T  1478506 tcaccttcttaaagatgttcctgggattgtttcaaagaacattgataaagcattggtcgaggctttccaaccattaaacatctctgattataattcaatc 1478605  T
Q  363 ttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagccactcggcatgtactta 462  Q
    || |||||||| |||||||| ||||  |||||||| |||||||||||||  || ||||||||||| || || |||||| | |||||| || | |||||||    
T  1478606 ttctggattgctcacccaggtggacccgcaattctagaccaagttgaagaaaagttaggcttaaaacctgaaaaaatgaaggccactagggaagtactta 1478705  T
Q  463 gtga 466  Q
    ||||    
T  1478706 gtga 1478709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 466
Target Start/End: Original strand, 1482785 - 1482903
Alignment:
Q  348 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagcca 447  Q
    |||||||| ||||| ||||||||||| || ||||| ||||  ||||||||||| |||||||||   || ||||||||||| || || || ||| ||||||    
T  1482785 gattacaactcaatcttttggattgctcatccaggtggacccgcaattcttgatcaagttgaacaaaagttaggcttaaaacctgaaaagatgaaagcca 1482884  T
Q  448 ctcggcatgtacttagtga 466  Q
    || |  | |||||||||||    
T  1482885 ctagagaagtacttagtga 1482903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 410
Target Start/End: Original strand, 1487256 - 1487324
Alignment:
Q  342 atctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaa 410  Q
    ||||| ||||||||| |||||||||||||||  |||||||||||||  |||||| | ||||| ||||||    
T  1487256 atctctgattacaatgcaattttttggattgtccacccaggcggacctgcaattttggaccatgttgaa 1487324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 409
Target Start/End: Original strand, 1509686 - 1509776
Alignment:
Q  319 ttgaggcctttcaaactttgaatatctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 409  Q
    ||||||| |||||| | || || ||||| |||||||| ||||| ||||||||||| |||||||  |||   |||||| |||||||||||||    
T  1509686 ttgaggcatttcaaccattaaacatctctgattacaactcaatattttggattgctcacccagatggagccgcaattattgaccaagttga 1509776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 1492754 - 1492818
Alignment:
Q  342 atctccgattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagt 406  Q
    ||||| |||||||| ||||| ||||||||||||||||| || ||||  |||||| | ||||||||    
T  1492754 atctctgattacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaagt 1492818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 35251114 - 35251292
Alignment:
Q  59 ttttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagc-------tgtgattgttggttcagaccc 151  Q
    ||||||||| |||||||| ||  |||||||||||||  ||||||  ||||||||||||||||| || |||||       |||||| ||||||||||| ||    
T  35251114 ttttcgtggccctagtgacacccatcttgatagtctcgtgggacaagcattgtttggagatggcgctgcagcctgcagctgtgatcgttggttcagatcc 35251213  T
Q  152 gttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagctatt 230  Q
     || || || |||||||  |||||||||||  | |  |||||||||||||| ||| |||| |||||| |||||||||||    
T  35251214 attacctgaggttgagagacctttgtttgagctagagtggactgcacaaacaatccttcctgatagtcaaggagctatt 35251292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 35251412 - 35251506
Alignment:
Q  357 tcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttgaagccaaattaggcttaaagccagagaaaatgcaagccactcg 451  Q
    ||||| ||||||||||| ||| | || |||| ||| ||||||||||||||||| | ||| |||||||| ||||| || ||| || ||||||||||    
T  35251412 tcaatcttttggattgctcacacgggtggaccagcgattcttgaccaagttgaggacaagttaggcttgaagcctgaaaaattggaagccactcg 35251506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 5310746 - 5310867
Alignment:
Q  105 gcattgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaacca 204  Q
    ||||||||||||||||| || || ||| | ||||||||||| |||||  | |||||| ||||||| ||| | |||||  |||| |||||||||||||| |    
T  5310746 gcattgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaa 5310845  T
Q  205 tcattccagatagtgaaggagc 226  Q
    |   ||| ||||||||||||||    
T  5310846 ttgctcctgatagtgaaggagc 5310867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 226
Target Start/End: Complemental strand, 5289466 - 5289349
Alignment:
Q  109 tgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccagaagttgagaagcctttgtttgaattggtatggactgcacaaaccatcat 208  Q
    ||||||||||||| || || ||| | ||||||||||| |||||  | |||||| ||||||| ||| | |||||  |||| |||||||||||||| ||       
T  5289466 tgtttggagatggagctgctgctcttattgttggttctgacccagtaccagaaattgagaaacctatatttgagatggtttggactgcacaaacaattgc 5289367  T
Q  209 tccagatagtgaaggagc 226  Q
    ||| ||||||||||||||    
T  5289366 tccggatagtgaaggagc 5289349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 5302800 - 5302966
Alignment:
Q  60 tttcgtggacctagtgatactgatcttgatagtcttatgggacgggcattgtttggagatggtgcggcagctgtgattgttggttcagacccgttgccag 159  Q
    |||||||| |||||||||||| |  | || |||||| | ||||  ||| | ||||||||||| || || ||| | |||||||| || |||||  | ||||    
T  5302800 tttcgtggccctagtgatactcacttggacagtcttgttggacaagcactatttggagatggagctgctgctcttattgttggctctgaccccgtaccag 5302899  T
Q  160 aagttgagaagcctttgtttgaattggtatggactgcacaaaccatcattccagatagtgaaggagc 226  Q
    || ||||||| ||| | |||||  |||| |||||||||||||| ||   ||| ||||||||||||||    
T  5302900 aaattgagaaacctatatttgagatggtttggactgcacaaacaattgctcctgatagtgaaggagc 5302966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 44129166 - 44129227
Alignment:
Q  348 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 409  Q
    |||||||||||||| ||||||||||||||||| || ||||  |||||||| || ||||||||    
T  44129166 gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga 44129227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 44133371 - 44133432
Alignment:
Q  348 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 409  Q
    |||||||||||||| ||||||||||||||||| || ||||  |||||||| || ||||||||    
T  44133371 gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga 44133432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 44141793 - 44141854
Alignment:
Q  348 gattacaattcaattttttggattgcacacccaggcggacgagcaattcttgaccaagttga 409  Q
    |||||||||||||| ||||||||||||||||| || ||||  |||||||| || ||||||||    
T  44141793 gattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagttga 44141854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5807 times since January 2019
Visitors: 5759