View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0790_low_8 (Length: 471)
Name: NF0790_low_8
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0790_low_8 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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| [»] scaffold0654 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 449
Target Start/End: Complemental strand, 4192 - 3753
Alignment:
| Q |
9 |
caacaatatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatga |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4192 |
caacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatga |
4093 |
T |
|
| Q |
109 |
tcccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctctta |
208 |
Q |
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|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4092 |
tccc-tcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttctctta |
3994 |
T |
|
| Q |
209 |
gctctttcctctgataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattctgattctcccaaacgatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3993 |
gctctttcctctgataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattctggttctcccaaacgatt |
3894 |
T |
|
| Q |
309 |
tgtcatttggtgaagcttattaactatttgagttcaactgtttggttaaagtagacaggtaatagaatataagtattacaactaaaccaaaatataattc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3893 |
tgtcatttggtgaagcttattaactatttgagttcaactgtttggtcaaagtagataggtaatagaatataagtattacaactaaaccaaaatataattc |
3794 |
T |
|
| Q |
409 |
atattagactaatatttggaactcaaatagcattttgatga |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3793 |
atattagactaatatttggaactcaaatagcattttgatga |
3753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 3687 - 3614
Alignment:
| Q |
127 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaa |
199 |
Q |
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||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||| || |||||||||||| |||| |
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| T |
3687 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttccattacaa |
3614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 35774278 - 35774482
Alignment:
| Q |
9 |
caacaatatacatagaccata--ctaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgat |
106 |
Q |
| |
|
|||||| ||| |||||||||| ||| |||||||||||| | |||||||||||||| || || |||||||||||| |||||||||||||||||||||||| |
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| T |
35774278 |
caacaaaatatatagaccatatactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgat |
35774377 |
T |
|
| Q |
107 |
gatcccctcaaattag------ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaa |
199 |
Q |
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|
||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||| || |||| |
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| T |
35774378 |
gatccacccaaattagtagcttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcatttgcacaacaa |
35774477 |
T |
|
| Q |
200 |
gttct |
204 |
Q |
| |
|
||||| |
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|
| T |
35774478 |
gttct |
35774482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 35848122 - 35848262
Alignment:
| Q |
70 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
162 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
|
| Q |
163 |
tcttcttccttttctccttccatcatttccatcacaagttc |
203 |
Q |
| |
|
|||| | | |||||||||||||||||||||||||||||||| |
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|
| T |
35848222 |
tcttttcctttttctccttccatcatttccatcacaagttc |
35848262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 35865814 - 35865944
Alignment:
| Q |
91 |
gaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttcc |
183 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| ||||| | | |||||||||||| |
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| T |
35865814 |
gaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatttcttttcctttttctccttcc |
35865913 |
T |
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| Q |
184 |
atcatttccatcacaagttctcttagctctt |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
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| T |
35865914 |
atcatttccatcacaagttctcttatctctt |
35865944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 40950878 - 40950954
Alignment:
| Q |
243 |
agataagtatagttttaccaacaattgttccatccaagaattgaattctga-ttctcccaaacgatttgtcatttggt |
319 |
Q |
| |
|
|||||| |||||| | ||||||||||||| ||||||| ||||||||| ||| |||| |||||||||||||||||||| |
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| T |
40950878 |
agataaatatagtctgaccaacaattgtttcatccaaaaattgaatt-tgagttctttcaaacgatttgtcatttggt |
40950954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 35220689 - 35220729
Alignment:
| Q |
292 |
gattctcccaaacgatttgtcatttggtgaagcttattaac |
332 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
35220689 |
gattatcccaaacgattcgtcatttggtgaagcttattaac |
35220729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 35754280 - 35754369
Alignment:
| Q |
126 |
tagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttccatcatttccatcacaagttctcttagctctt |
214 |
Q |
| |
|
||||||||||||||||||| | || |||| || ||| || || | |||||||||||| ||||||||||| ||||||||| ||| ||||| |
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|
| T |
35754280 |
tagctttcttcttccactctatgctcttttgtttcatttgttttcccttttctcctttcatcatttccagtacaagttctgttatctctt |
35754369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 141 - 1
Alignment:
| Q |
70 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
162 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
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|
| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
|
| Q |
163 |
tcttcttccttttctccttccatcatttccatcacaagttc |
203 |
Q |
| |
|
|||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
41 |
tcttttcctttttctccttccatcatttccatcacaagttc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 551 - 472
Alignment:
| Q |
126 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct |
472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 551 - 472
Alignment:
| Q |
126 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcacaatttct |
472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 40930746 - 40930673
Alignment:
| Q |
243 |
agataagtatagttttaccaacaattgttccatccaagaattgaattctgattctcccaaacgatttgtcattt |
316 |
Q |
| |
|
||||||||||||||| || || ||||||| ||||||||||| ||||| ||||||| ||||||||| ||||||| |
|
|
| T |
40930746 |
agataagtatagtttgacaaataattgtttcatccaagaatcaaattcggattctctcaaacgattcgtcattt |
40930673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 38360918 - 38360850
Alignment:
| Q |
222 |
ataatctagagtttggttgtgagataagtatagttttaccaacaattgttccatccaagaattgaattc |
290 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| |||| |||| ||||||| ||||||||||||| |
|
|
| T |
38360918 |
ataatctagagtttgattgtgaggtaagtatagttggtccaagaattattccatctaagaattgaattc |
38360850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 39818662 - 39818701
Alignment:
| Q |
319 |
tgaagcttattaactatttgagttcaactgtttggttaaa |
358 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
39818662 |
tgaagcttattaactatttgagttcaattgcttggttaaa |
39818701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 3618 - 3656
Alignment:
| Q |
294 |
ttctcccaaacgatttgtcatttggtgaagcttattaac |
332 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
3618 |
ttctcccaaacgatttgtcatttggtaaagctcattaac |
3656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 29453266 - 29453220
Alignment:
| Q |
310 |
gtcatttggtgaagcttattaactatttgagttcaactgtttggtta |
356 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||| |||||||||| |
|
|
| T |
29453266 |
gtcatttggtgaagttcattaactatttgagctcaattgtttggtta |
29453220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 118833 - 118773
Alignment:
| Q |
281 |
aattgaattctgattctcccaaacgatttgtcatttggtgaagcttattaactatttgagt |
341 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||||| |||| ||||| |||||||| |
|
|
| T |
118833 |
aattgaattcagattctcccaaacgatatgttctttggtggagctcgttaaccatttgagt |
118773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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