View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0790_low_9 (Length: 469)

Name: NF0790_low_9
Description: NF0790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0790_low_9
NF0790_low_9
[»] chr4 (64 HSPs)
chr4 (96-312)||(34136720-34136936)
chr4 (99-312)||(34131029-34131242)
chr4 (325-459)||(34136532-34136676)
chr4 (99-312)||(34142524-34142737)
chr4 (109-299)||(34125900-34126090)
chr4 (99-312)||(34139878-34140091)
chr4 (325-400)||(19934632-19934707)
chr4 (325-400)||(54164807-54164882)
chr4 (325-406)||(54164878-54164959)
chr4 (326-406)||(29006830-29006910)
chr4 (337-399)||(37255688-37255750)
chr4 (325-406)||(19934703-19934784)
chr4 (324-412)||(21586977-21587065)
chr4 (324-400)||(29006906-29006982)
chr4 (324-399)||(3094338-3094413)
chr4 (336-399)||(15659940-15660003)
chr4 (333-399)||(20788107-20788173)
chr4 (325-399)||(52914070-52914144)
chr4 (331-400)||(6462783-6462852)
chr4 (328-397)||(20215564-20215633)
chr4 (336-385)||(22020121-22020170)
chr4 (325-396)||(55936062-55936133)
chr4 (333-399)||(3740380-3740446)
chr4 (333-399)||(4983291-4983357)
chr4 (325-399)||(12927103-12927177)
chr4 (325-399)||(24851405-24851479)
chr4 (325-399)||(26920666-26920740)
chr4 (325-399)||(28702133-28702207)
chr4 (335-400)||(16667134-16667199)
chr4 (324-397)||(28702054-28702127)
chr4 (333-398)||(54106477-54106542)
chr4 (330-406)||(2401039-2401115)
chr4 (326-390)||(20598252-20598316)
chr4 (337-397)||(35005129-35005189)
chr4 (336-392)||(37255760-37255816)
chr4 (342-406)||(47397945-47398009)
chr4 (333-384)||(20788038-20788089)
chr4 (333-384)||(31280335-31280386)
chr4 (330-397)||(45828571-45828638)
chr4 (325-391)||(3504071-3504137)
chr4 (337-399)||(4386329-4386391)
chr4 (325-399)||(4406235-4406309)
chr4 (338-392)||(5535721-5535775)
chr4 (333-399)||(5535785-5535851)
chr4 (337-399)||(6087505-6087567)
chr4 (327-401)||(16039957-16040031)
chr4 (338-392)||(26636519-26636573)
chr4 (335-385)||(28815869-28815919)
chr4 (325-355)||(52281112-52281142)
chr4 (337-398)||(3094273-3094334)
chr4 (339-392)||(11796663-11796716)
chr4 (337-390)||(20215640-20215693)
chr4 (336-397)||(24941116-24941177)
chr4 (322-355)||(33036980-33037013)
chr4 (323-392)||(44171426-44171495)
chr4 (337-390)||(44171513-44171565)
chr4 (325-393)||(5281213-5281281)
chr4 (335-395)||(11796589-11796649)
chr4 (325-393)||(13689530-13689598)
chr4 (333-397)||(13689610-13689674)
chr4 (324-384)||(24851497-24851557)
chr4 (333-365)||(29588486-29588518)
chr4 (325-385)||(41905873-41905933)
chr4 (325-381)||(54338916-54338972)
[»] chr1 (51 HSPs)
chr1 (324-401)||(52923316-52923393)
chr1 (333-399)||(5431343-5431409)
chr1 (335-399)||(42660427-42660491)
chr1 (333-400)||(19175590-19175657)
chr1 (336-399)||(52112881-52112944)
chr1 (326-399)||(1602889-1602962)
chr1 (324-400)||(23944030-23944106)
chr1 (333-399)||(10256783-10256849)
chr1 (325-399)||(48083498-48083572)
chr1 (333-398)||(5431413-5431478)
chr1 (325-393)||(14214607-14214675)
chr1 (338-398)||(34597527-34597587)
chr1 (325-385)||(51022711-51022771)
chr1 (326-397)||(8258017-8258088)
chr1 (326-397)||(11989383-11989454)
chr1 (325-384)||(14214544-14214603)
chr1 (324-395)||(19175664-19175735)
chr1 (333-392)||(19580272-19580331)
chr1 (326-393)||(34658381-34658448)
chr1 (336-399)||(42915652-42915715)
chr1 (333-399)||(1409121-1409187)
chr1 (337-399)||(2122641-2122703)
chr1 (333-399)||(34768350-34768416)
chr1 (333-399)||(38834613-38834679)
chr1 (340-390)||(42660366-42660416)
chr1 (324-397)||(33604065-33604138)
chr1 (330-399)||(47446703-47446772)
chr1 (325-385)||(35156329-35156389)
chr1 (325-385)||(46412697-46412757)
chr1 (325-397)||(48022589-48022661)
chr1 (326-397)||(639794-639865)
chr1 (325-392)||(1035881-1035948)
chr1 (324-399)||(11989302-11989377)
chr1 (323-398)||(15351707-15351782)
chr1 (326-393)||(35367556-35367623)
chr1 (326-393)||(52923401-52923468)
chr1 (337-395)||(6340565-6340623)
chr1 (325-399)||(29302137-29302211)
chr1 (324-358)||(33939410-33939444)
chr1 (333-398)||(14958683-14958748)
chr1 (326-355)||(18353688-18353717)
chr1 (345-398)||(34597586-34597639)
chr1 (326-399)||(34953891-34953964)
chr1 (328-397)||(34953970-34954039)
chr1 (325-398)||(47446626-47446699)
chr1 (335-375)||(1409053-1409093)
chr1 (325-365)||(27939181-27939221)
chr1 (333-393)||(37734775-37734835)
chr1 (325-397)||(37734847-37734919)
chr1 (326-398)||(38468759-38468831)
chr1 (325-393)||(51022793-51022861)
[»] chr3 (39 HSPs)
chr3 (324-399)||(2128433-2128508)
chr3 (333-392)||(4190631-4190690)
chr3 (325-399)||(22496945-22497019)
chr3 (338-399)||(4190700-4190761)
chr3 (333-406)||(42787681-42787753)
chr3 (325-397)||(10872746-10872818)
chr3 (335-399)||(36571379-36571443)
chr3 (325-384)||(12708682-12708741)
chr3 (333-399)||(105443-105509)
chr3 (325-399)||(611576-611650)
chr3 (333-399)||(611653-611719)
chr3 (333-403)||(40639777-40639847)
chr3 (325-399)||(45736681-45736755)
chr3 (325-398)||(26367465-26367538)
chr3 (332-385)||(36566721-36566774)
chr3 (338-399)||(39836937-39836998)
chr3 (326-399)||(40470490-40470563)
chr3 (325-394)||(50603590-50603659)
chr3 (325-393)||(105366-105434)
chr3 (325-397)||(35572074-35572146)
chr3 (333-397)||(52931643-52931707)
chr3 (335-385)||(13900232-13900283)
chr3 (325-396)||(54595784-54595855)
chr3 (337-399)||(24722693-24722755)
chr3 (337-399)||(39682615-39682677)
chr3 (325-399)||(42787610-42787684)
chr3 (344-406)||(44037047-44037109)
chr3 (323-397)||(50260925-50260999)
chr3 (325-390)||(331879-331944)
chr3 (336-397)||(7981150-7981211)
chr3 (326-399)||(12744973-12745046)
chr3 (324-393)||(51239321-51239390)
chr3 (326-399)||(52215952-52216025)
chr3 (345-405)||(1086575-1086635)
chr3 (326-397)||(21403970-21404039)
chr3 (326-358)||(38677560-38677592)
chr3 (326-397)||(41349734-41349806)
chr3 (331-363)||(45613464-45613496)
chr3 (325-397)||(51617405-51617477)
[»] chr7 (38 HSPs)
chr7 (333-404)||(43813127-43813198)
chr7 (325-383)||(18654244-18654302)
chr7 (331-399)||(8169168-8169236)
chr7 (335-399)||(11602839-11602903)
chr7 (333-392)||(34840616-34840675)
chr7 (333-399)||(36547658-36547724)
chr7 (326-399)||(10095714-10095787)
chr7 (325-393)||(31417595-31417663)
chr7 (332-399)||(34478307-34478374)
chr7 (325-399)||(16777886-16777960)
chr7 (325-399)||(18654540-18654614)
chr7 (337-399)||(21099315-21099377)
chr7 (342-399)||(8169108-8169165)
chr7 (325-398)||(25245216-25245289)
chr7 (324-397)||(34703517-34703590)
chr7 (333-393)||(11602770-11602830)
chr7 (326-406)||(12274804-12274884)
chr7 (325-392)||(10422887-10422954)
chr7 (325-412)||(12274868-12274955)
chr7 (325-399)||(2360443-2360517)
chr7 (331-365)||(21857192-21857226)
chr7 (333-399)||(30457802-30457868)
chr7 (325-399)||(31319588-31319662)
chr7 (337-399)||(32599734-32599796)
chr7 (333-399)||(34840733-34840799)
chr7 (326-399)||(8571377-8571450)
chr7 (337-394)||(10599069-10599126)
chr7 (337-406)||(18654611-18654680)
chr7 (326-399)||(21103318-21103391)
chr7 (325-390)||(26824900-26824965)
chr7 (342-399)||(28752090-28752147)
chr7 (337-406)||(37491338-37491407)
chr7 (325-397)||(38238777-38238850)
chr7 (326-398)||(2943207-2943279)
chr7 (325-393)||(15051161-15051229)
chr7 (325-385)||(21886461-21886521)
chr7 (323-399)||(23797340-23797416)
chr7 (333-397)||(40416980-40417044)
[»] chr5 (52 HSPs)
chr5 (324-399)||(7313902-7313977)
chr5 (325-399)||(33075137-33075211)
chr5 (335-412)||(27895901-27895977)
chr5 (324-399)||(1098699-1098774)
chr5 (333-399)||(25713770-25713836)
chr5 (338-399)||(1098635-1098696)
chr5 (325-398)||(25408537-25408610)
chr5 (324-393)||(43506172-43506241)
chr5 (333-393)||(18261602-18261662)
chr5 (322-402)||(23420977-23421057)
chr5 (325-397)||(25408617-25408689)
chr5 (335-406)||(2673851-2673922)
chr5 (333-396)||(25792921-25792984)
chr5 (325-399)||(20019820-20019894)
chr5 (330-412)||(42247551-42247633)
chr5 (334-399)||(13654580-13654645)
chr5 (333-398)||(25358060-25358125)
chr5 (324-397)||(26300104-26300177)
chr5 (333-386)||(40515229-40515282)
chr5 (325-393)||(3851441-3851509)
chr5 (325-397)||(23914835-23914907)
chr5 (333-392)||(40100165-40100225)
chr5 (333-397)||(42013824-42013888)
chr5 (336-396)||(43506112-43506172)
chr5 (325-412)||(13356196-13356283)
chr5 (333-396)||(13654511-13654574)
chr5 (335-397)||(11262332-11262394)
chr5 (336-406)||(13391536-13391606)
chr5 (333-387)||(17225164-17225218)
chr5 (336-406)||(17967380-17967450)
chr5 (325-395)||(33684032-33684102)
chr5 (333-375)||(40515277-40515319)
chr5 (326-399)||(1996842-1996915)
chr5 (338-399)||(3100412-3100473)
chr5 (325-390)||(6763778-6763843)
chr5 (325-386)||(9707079-9707140)
chr5 (326-399)||(27314470-27314543)
chr5 (326-390)||(71254-71318)
chr5 (325-397)||(3851357-3851429)
chr5 (326-398)||(7724955-7725027)
chr5 (325-397)||(7725028-7725100)
chr5 (333-393)||(11262406-11262466)
chr5 (325-393)||(12750196-12750264)
chr5 (324-380)||(13356099-13356155)
chr5 (326-390)||(14772627-14772691)
chr5 (325-393)||(19531295-19531363)
chr5 (333-397)||(19531375-19531439)
chr5 (326-386)||(26045260-26045320)
chr5 (326-358)||(26141750-26141782)
chr5 (333-385)||(36864508-36864560)
chr5 (333-393)||(37944604-37944664)
chr5 (325-393)||(37944680-37944748)
[»] chr2 (32 HSPs)
chr2 (325-399)||(32316412-32316486)
chr2 (326-399)||(26229517-26229590)
chr2 (325-398)||(3123897-3123970)
chr2 (326-405)||(15446844-15446923)
chr2 (325-399)||(15119771-15119845)
chr2 (333-399)||(27964286-27964352)
chr2 (338-392)||(41824268-41824322)
chr2 (333-399)||(41824332-41824398)
chr2 (326-399)||(1961381-1961454)
chr2 (326-379)||(15446774-15446827)
chr2 (325-397)||(37195046-37195118)
chr2 (333-397)||(44274615-44274679)
chr2 (333-392)||(3123982-3124041)
chr2 (326-392)||(10221967-10222033)
chr2 (338-399)||(18731342-18731404)
chr2 (324-398)||(26836228-26836302)
chr2 (333-399)||(36547413-36547479)
chr2 (324-406)||(44089419-44089501)
chr2 (333-399)||(44274544-44274610)
chr2 (333-399)||(44587645-44587711)
chr2 (325-358)||(26234137-26234170)
chr2 (324-393)||(38594422-38594491)
chr2 (333-390)||(43542999-43543056)
chr2 (338-399)||(44094872-44094933)
chr2 (331-399)||(4860239-4860307)
chr2 (325-397)||(5574184-5574256)
chr2 (325-397)||(12242314-12242386)
chr2 (325-393)||(14308653-14308721)
chr2 (335-406)||(14952830-14952901)
chr2 (326-398)||(23378015-23378087)
chr2 (324-384)||(26229439-26229499)
chr2 (325-393)||(38598018-38598086)
[»] scaffold0059 (1 HSPs)
scaffold0059 (326-399)||(4445-4518)
[»] chr6 (27 HSPs)
chr6 (324-397)||(13276479-13276552)
chr6 (326-399)||(30422328-30422401)
chr6 (324-399)||(8449567-8449642)
chr6 (324-399)||(8458371-8458446)
chr6 (326-397)||(32254895-32254966)
chr6 (336-404)||(14173395-14173463)
chr6 (336-404)||(14177931-14177999)
chr6 (325-395)||(15718469-15718539)
chr6 (326-412)||(15836534-15836620)
chr6 (325-399)||(18886302-18886376)
chr6 (333-395)||(31632183-31632245)
chr6 (333-395)||(18491736-18491799)
chr6 (325-396)||(34379810-34379881)
chr6 (324-398)||(13277095-13277169)
chr6 (326-392)||(13462928-13462994)
chr6 (325-395)||(13463008-13463078)
chr6 (333-390)||(3203673-3203730)
chr6 (326-399)||(4844284-4844357)
chr6 (333-382)||(24110222-24110271)
chr6 (333-385)||(8449662-8449714)
chr6 (333-385)||(8458466-8458518)
chr6 (335-399)||(15517162-15517226)
chr6 (325-393)||(15836617-15836685)
chr6 (326-358)||(18097055-18097087)
chr6 (325-393)||(21506457-21506525)
chr6 (330-390)||(24111180-24111240)
chr6 (326-358)||(31398339-31398371)
[»] scaffold0149 (1 HSPs)
scaffold0149 (327-399)||(24678-24750)
[»] chr8 (37 HSPs)
chr8 (325-400)||(7410559-7410634)
chr8 (333-393)||(24820375-24820435)
chr8 (336-395)||(24820303-24820362)
chr8 (333-399)||(24418883-24418949)
chr8 (333-395)||(28882666-28882728)
chr8 (323-397)||(29424057-29424131)
chr8 (325-399)||(40640272-40640346)
chr8 (336-412)||(6260668-6260744)
chr8 (340-393)||(7428901-7428954)
chr8 (328-405)||(28882730-28882807)
chr8 (338-395)||(36307999-36308056)
chr8 (326-394)||(7377549-7377617)
chr8 (326-390)||(10117051-10117115)
chr8 (326-398)||(10934676-10934748)
chr8 (325-397)||(40098834-40098906)
chr8 (326-397)||(9056095-9056166)
chr8 (326-397)||(14381233-14381304)
chr8 (344-399)||(24418952-24419007)
chr8 (326-397)||(41387836-41387907)
chr8 (323-400)||(15037821-15037899)
chr8 (325-399)||(18018240-18018314)
chr8 (325-399)||(24287779-24287853)
chr8 (337-399)||(35781233-35781295)
chr8 (333-399)||(42749057-42749123)
chr8 (333-406)||(2627176-2627249)
chr8 (326-399)||(24053592-24053665)
chr8 (336-397)||(26014574-26014635)
chr8 (326-399)||(33070160-33070233)
chr8 (361-405)||(2345781-2345825)
chr8 (333-393)||(6260611-6260671)
chr8 (326-354)||(7410682-7410710)
chr8 (325-393)||(9056015-9056083)
chr8 (330-390)||(13841847-13841907)
chr8 (333-397)||(17087357-17087421)
chr8 (325-381)||(28939512-28939568)
chr8 (325-385)||(36698716-36698776)
chr8 (333-393)||(37509013-37509073)
[»] scaffold0024 (2 HSPs)
scaffold0024 (325-395)||(120139-120209)
scaffold0024 (325-393)||(120223-120291)
[»] scaffold0148 (1 HSPs)
scaffold0148 (340-399)||(21193-21252)
[»] scaffold0039 (1 HSPs)
scaffold0039 (326-396)||(54463-54533)
[»] scaffold0047 (1 HSPs)
scaffold0047 (325-393)||(61157-61225)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 64)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 96 - 312
Target Start/End: Complemental strand, 34136936 - 34136720
Alignment:
Q  96 cacactagctttattagattcaaccactatcctccatgcccttaccctcacctagctctcggcgttgggcgacacaaggatgctggtgccttaactattc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34136936 cacactagctttattagattcaaccactatcctccatgcccttaccctcacctagctctcggcgttgggcgacacaaggatgctggtgccttaactattc 34136837  T
Q  196 ttgcccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacctcagatgcttacattatcaacgtttg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34136836 ttgcccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacctcagatgcttacattatcaacgtttg 34136737  T
Q  296 tgatattatccaggtac 312  Q
    |||||||||||||||||    
T  34136736 tgatattatccaggtac 34136720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 99 - 312
Target Start/End: Complemental strand, 34131242 - 34131029
Alignment:
Q  99 actagctttattagattcaaccactatcctccatgcccttaccctcacctagctctcggcgttgggcgacacaaggatgctggtgccttaactattcttg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||    
T  34131242 actagctttattagattcaaccactatcctccatgcccttaccctcacctagcacttggagttggacgacacaaggatgctggtgccttaactattcttg 34131143  T
Q  199 cccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacctcagatgcttacattatcaacgtttgtga 298  Q
    |||||||||| ||||| || |||||||||||||  ||| ||   ||| | ||||||||||||||||||||| ||||||||||||||||||| ||| ||||    
T  34131142 cccaagatgaggttggaggacttgaagtgaagcgtaaatcagaccaacaatgggttcttgtgaaacctaccccagatgcttacattatcaatgttggtga 34131043  T
Q  299 tattatccaggtac 312  Q
    ||| || |||||||    
T  34131042 tatcattcaggtac 34131029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 325 - 459
Target Start/End: Complemental strand, 34136676 - 34136532
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacacaagaaaataatga 424  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  34136676 atacaccatccggtcactattataagtaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacacgagaaaataacga 34136577  T
Q  425 gag----------atcgttgcaggtttggagtaatgatgcctatg 459  Q
    |||          || |||||||||||||||||||||||||||||    
T  34136576 gagacttgggtttattgttgcaggtttggagtaatgatgcctatg 34136532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 99 - 312
Target Start/End: Complemental strand, 34142737 - 34142524
Alignment:
Q  99 actagctttattagattcaaccactatcctccatgcccttaccctcacctagctctcggcgttgggcgacacaaggatgctggtgccttaactattcttg 198  Q
    ||||||||| ||||| | ||||| |||||||||||||||||||||||||| ||||| || | ||| | ||| |||||| |||||||||||||||||||||    
T  34142737 actagctttcttagacttaaccattatcctccatgcccttaccctcaccttgctcttggtgctggtccacataaggattctggtgccttaactattcttg 34142638  T
Q  199 cccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacctcagatgcttacattatcaacgtttgtga 298  Q
    |||||||||| ||||| || |||||||||||||  ||| ||   ||| ||||||||||||||||||| ||  |||||||||| ||||| || ||| ||||    
T  34142637 cccaagatgaggttggaggacttgaagtgaagcggaaaacagatcaacagtgggttcttgtgaaacccacaccagatgcttatattattaatgttggtga 34142538  T
Q  299 tattatccaggtac 312  Q
    | | || |||||||    
T  34142537 tgtcattcaggtac 34142524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 109 - 299
Target Start/End: Complemental strand, 34126090 - 34125900
Alignment:
Q  109 ttagattcaaccactatcctccatgcccttaccctcacctagctctcggcgttgggcgacacaaggatgctggtgccttaactattcttgcccaagatga 208  Q
    ||||| |||| |||||||||||||| ||||  ||| | |||||||| ||| | ||  |||||||||||||||||||||||||||||||||||||||||||    
T  34126090 ttagaatcaatcactatcctccatgtccttctcctgagctagctcttggcatgggaagacacaaggatgctggtgccttaactattcttgcccaagatga 34125991  T
Q  209 tgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacctcagatgcttacattatcaacgtttgtgat 299  Q
     ||||  |||||||||||||||||  ||   |||||||| ||||||||||||||||| ||| || |||||| ||| ||||||||| |||||    
T  34125990 ggttgctggtcttgaagtgaagcatcaaatttcacaagaatgggttcttgtgaaacccaccccaaatgctttcatcatcaacgttggtgat 34125900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 99 - 312
Target Start/End: Complemental strand, 34140091 - 34139878
Alignment:
Q  99 actagctttattagattcaaccactatcctccatgcccttaccctcacctagctctcggcgttgggcgacacaaggatgctggtgccttaactattcttg 198  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||| |||||||||     
T  34140091 actagctttataagattcaactactatcctccatgcccttaccctcacctagctcttggccttggaagacacaaggatgctggtgccttgactattctta 34139992  T
Q  199 cccaagatgatgttgggggtcttgaagtgaagcacaaagcatcacaagagtgggttcttgtgaaacctacctcagatgcttacattatcaacgtttgtga 298  Q
    ||| | |||| ||||  ||||||||||||||||  ||| ||   ||| |  |||||||||| |||||||||  |||| | || ||||||||| || | |     
T  34139991 ccctaaatgaggttgaaggtcttgaagtgaagcgtaaaacagatcaacaacgggttcttgtaaaacctacccgagatccgtatattatcaacattggcgg 34139892  T
Q  299 tattatccaggtac 312  Q
    |||||| |||||||    
T  34139891 tattattcaggtac 34139878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 19934632 - 19934707
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    ||||||| ||||||||||||||||||||||| | || |||| || |||||||||||||||| ||||||||||||||    
T  19934632 atacaccctccggtcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtctatt 19934707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 54164807 - 54164882
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    ||||||| ||||||||||||||||||||||| | || |||| || |||||||||||||||| ||||||||||||||    
T  54164807 atacaccctccggtcactattataagcaaaattccactttttagattcattcaataaatgatgtatgtggtctatt 54164882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 54164959 - 54164878
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    ||||||| ||||||||||||||||||||||| |  |||||| || |||||||||||||||| |||||||||| |||| ||||    
T  54164959 atacaccctccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgtggtccattaaatag 54164878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 29006830 - 29006910
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||||||||||||||||||||||||||| |  |||||| || |||||||||||||||| ||||||| || |||| ||||    
T  29006830 tacaccatccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgtgatccattaaatag 29006910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 37255688 - 37255750
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||  ||||| || |||||||||||||||| |||||||||||||    
T  37255688 gtcactattataagcaaaagttggttttttagattcattcaataaatgatgtatgtggtctat 37255750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 19934784 - 19934703
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    ||||||| |||| |||||||||||||||||| |  |||||| || |||||||||||||||| |||||||||| |||| ||||    
T  19934784 atacaccctccgatcactattataagcaaaaatctattttttagattcattcaataaatgatgtatgtggtccattaaatag 19934703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 21587065 - 21586977
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacaca 412  Q
    |||||||||||||||||| ||||||  ||||| |  | |||| || |||||||||||||||| |||||| |||||| ||||||||||||    
T  21587065 catacaccatccggtcacaattatagtcaaaaataaactttttagattcattcaataaatgatgtatgtagtctataatataggacaca 21586977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 29006982 - 29006906
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    |||||| | ||||||||||||||||||||||| | || |||| |  |||||||||||||||| ||||||||||||||    
T  29006982 catacatcctccggtcactattataagcaaaattccactttttaaattcattcaataaatgatgtatgtggtctatt 29006906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 3094413 - 3094338
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||| || ||||||||||||||||| |||||||| | |||| || |||||||||||||||| |||||| ||||||    
T  3094413 catactccctccggtcactattataaccaaaagttgactttttaggttcattcaataaatgacgtatgtagtctat 3094338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 15659940 - 15660003
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||| ||||||||||||| |||| || |||||||||||||||| |||||| ||||||    
T  15659940 ggtcactattacaagcaaaagttcactttttaggttcattcaataaatgatgtatgtagtctat 15660003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 20788173 - 20788107
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||| ||||||||  || |||||||| ||||||  |||||||||||||    
T  20788173 tccggtcactattataagcaaaaattcattttctaggttcattcattaaatgttgtatgtggtctat 20788107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 52914144 - 52914070
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||  |||||||||||||||||||| || || ||| || |||||||| ||||||| |||||||||||||    
T  52914144 atacaccataaggtcactattataagcaaaaattaatattttagattcattcattaaatgatgtatgtggtctat 52914070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 6462852 - 6462783
Alignment:
Q  331 catccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    ||||||| ||||||||||| ||||| || |||||| || |||||||||||||||| ||||||| ||||||    
T  6462852 catccggccactattataaacaaaattttattttttagattcattcaataaatgatgtatgtgatctatt 6462783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 397
Target Start/End: Original strand, 20215564 - 20215633
Alignment:
Q  328 caccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||| ||||||||||||||||||||||| || |  ||| || |||||||||||||||| |||||||||||    
T  20215564 caccctccggtcactattataagcaaaaattgacattttaggttcattcaataaatgatgtatgtggtct 20215633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 22020121 - 22020170
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||||||    
T  22020121 ggtcactattataagcaaaagttcactttttagattcattcaataaatga 22020170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 55936133 - 55936062
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtc 396  Q
    ||||||||| ||||||||||||||||||||| |  || ||| || |||||||| ||||||| ||||||||||    
T  55936133 atacaccatacggtcactattataagcaaaaatcaatattttagattcattcattaaatgatgtatgtggtc 55936062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 3740446 - 3740380
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||| |||||||||||||| | |||| || |||||||||||||||| | |||| ||||||    
T  3740446 tccggtcactaatataagcaaaagttgactttttaggttcattcaataaatgatgcatgtagtctat 3740380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 4983357 - 4983291
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||| |||||||||||||||||| ||||||||  || |||||||| ||||||  |||||||||||||    
T  4983357 tccgatcactattataagcaaaacttcattttctaggttcattcattaaatgttgtatgtggtctat 4983291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 12927103 - 12927177
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| || |||||||||||||||||||| ||||||||  || |||||||| ||||||  ||| |||||||||    
T  12927103 atacaccctcaggtcactattataagcaaaaattcattttctaggttcattcattaaatgttgtacgtggtctat 12927177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 24851405 - 24851479
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| || |||||||||||||||||||| ||||||||  || |||||||| ||||||  |||||| ||||||    
T  24851405 atacaccctctggtcactattataagcaaaaattcattttctaggttcattcattaaatgttgtatgttgtctat 24851479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 26920666 - 26920740
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||||||||||| ||  | ||| || |||||||  ||||||| ||| |||||||||    
T  26920666 atacaccatccggtcactattataagcaaaattttgtattttagattcattcgttaaatgatgtacgtggtctat 26920740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 28702207 - 28702133
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||| ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||||    
T  28702207 atacaccctccggtcactaatataagcaaaagtttgatttttaggttcattcattaaatgacgtatgtagtctat 28702133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 400
Target Start/End: Complemental strand, 16667199 - 16667134
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    |||||||||||||||| ||||||| |  ||| |  |||||||||||||||| ||||||||||||||    
T  16667199 cggtcactattataagtaaaagttgacattttacgttcattcaataaatgatgtatgtggtctatt 16667134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 28702054 - 28702127
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||| ||||||||||| ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||    
T  28702054 catacaccctccggtcactaatataagcaaaagtttgatttttagattcattcattaaatgatgtatgtagtct 28702127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 54106477 - 54106542
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||||| | ||||||||||| ||||| ||| || |||||||||||||||| |||||| |||||    
T  54106477 tccggtcacaaatataagcaaaaattcatattttagattcattcaataaatgatgtatgttgtcta 54106542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 406
Target Start/End: Original strand, 2401039 - 2401115
Alignment:
Q  330 ccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    ||||| ||||| ||||||||||||||||| | |||| |  |||||||||||||||| |||| ||||| || ||||||    
T  2401039 ccatctggtcattattataagcaaaagttaactttttaaattcattcaataaatgatgtatttggtcaataatatag 2401115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 20598252 - 20598316
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    |||||||||||||||| | ||||||||||| ||||| ||| || | |||||||||||||| ||||    
T  20598252 tacaccatccggtcacaaatataagcaaaaattcatgttttagatacattcaataaatgatgtat 20598316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 397
Target Start/End: Complemental strand, 35005189 - 35005129
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| |||||||||||| |||| |||| || |||||||||||||| | |||||||||||    
T  35005189 gtcactgttataagcaaaaattcaatttttagattcattcaataaataatgtatgtggtct 35005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 37255816 - 37255760
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    ||||||||||||||||||||||||| |||| |  |||||||||||||| | ||||||    
T  37255816 ggtcactattataagcaaaagttcactttttaaattcattcaataaattatgtatgt 37255760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 47398009 - 47397945
Alignment:
Q  342 tattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||||| ||||  ||||||||| || || |||||||||||||  |||||||||||||||||||    
T  47398009 tattataaacaaaccttcattttttaggtttattcaataaatgatatatgtggtctattatatag 47397945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 20788038 - 20788089
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatg 384  Q
    ||||||||||||||||||||||| ||||| ||| || |||||||| ||||||    
T  20788038 tccggtcactattataagcaaaaattcatattttaggttcattcattaaatg 20788089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 31280335 - 31280386
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatg 384  Q
    |||||||||||||||||||||||   ||||||| || |||||||||||||||    
T  31280335 tccggtcactattataagcaaaacaccattttttagattcattcaataaatg 31280386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 45828638 - 45828571
Alignment:
Q  330 ccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||||| |||||||||| ||||||| |||||| |   ||||||||||||||| ||||| |||||    
T  45828638 ccatccggtctctattataagtaaaagttgattttttatggtcattcaataaatgatgtatgaggtct 45828571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 3504071 - 3504137
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatg 391  Q
    |||||||||||  |||||| ||||| ||||| ||||||||| || |||||||||| ||||| |||||    
T  3504071 atacaccatccaatcactaatataaacaaaaattcattttttagattcattcaattaatgatgtatg 3504137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 4386329 - 4386391
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||||||| | |||| || || ||| | ||||||| |||||||||||||    
T  4386329 gtcactattataagcaaaagttgactttttagattaatttattaaatgatgtatgtggtctat 4386391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 4406235 - 4406309
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||||||||||| |||| |  |  ||| || || ||||| ||||||| |||||||||||||    
T  4406235 atacaccatccggtcactattataagtaaaaatcaacattttagatttattcattaaatgatgtatgtggtctat 4406309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 5535721 - 5535775
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||| |||||||||||  |||||||| || |||||||||||||||| ||||||    
T  5535721 tcactagtataagcaaaaactcattttttagattcattcaataaatgatgtatgt 5535775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 5535851 - 5535785
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||| |||||||||||||||||| || | || | || |||||||||||| ||| |||||||||||||    
T  5535851 tccgatcactattataagcaaaaattgacttgttaggttcattcaataactgatgtatgtggtctat 5535785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 6087567 - 6087505
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||| ||||||||||||| || | ||||||| || ||||||||||||| |||||| ||||||    
T  6087567 gtcacaattataagcaaaaatttaattttcagatttattcaataaatgatgtatgtagtctat 6087505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 16039957 - 16040031
Alignment:
Q  327 acaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatta 401  Q
    ||||||| ||||||| | |||||| |||| |||| |||| || || ||||||||||||| |||||||| ||||||    
T  16039957 acaccattcggtcacgaatataagaaaaaattcaatttttaggttaattcaataaatgacgtatgtggactatta 16040031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 26636573 - 26636519
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    ||||||||||||| |||| || |||||| || |||||||||||||||| ||||||    
T  26636573 tcactattataagtaaaaatttattttttagattcattcaataaatgatgtatgt 26636519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 28815919 - 28815869
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    |||||||||||||||||||||||| | |||| || |||||| |||||||||    
T  28815919 cggtcactattataagcaaaagttgactttttaggttcatttaataaatga 28815869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 355
Target Start/End: Original strand, 52281112 - 52281142
Alignment:
Q  325 atacaccatccggtcactattataagcaaaa 355  Q
    |||||||||||||||||||||||||||||||    
T  52281112 atacaccatccggtcactattataagcaaaa 52281142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 3094273 - 3094334
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||||||||| ||||| || |||||| |  |||||||||||||||| |||| |||||||    
T  3094273 gtcactattataaacaaaaatttattttttatattcattcaataaatgatgtatatggtcta 3094334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 11796716 - 11796663
Alignment:
Q  339 cactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    ||||||||||||||||| |||| |||| || || ||||||||||||| ||||||    
T  11796716 cactattataagcaaaaattcactttttagatttattcaataaatgatgtatgt 11796663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 20215693 - 20215640
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||||| |||||||||||| || ||| || |||||||||||||||| ||||    
T  20215693 gtcactattttaagcaaaagttgatattttagattcattcaataaatgatgtat 20215640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 24941116 - 24941177
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||||||    
T  24941116 ggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtggtct 24941177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 33037013 - 33036980
Alignment:
Q  322 ggcatacaccatccggtcactattataagcaaaa 355  Q
    |||||||||| |||||||||||||||||||||||    
T  33037013 ggcatacaccctccggtcactattataagcaaaa 33036980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 392
Target Start/End: Original strand, 44171426 - 44171495
Alignment:
Q  323 gcatacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||| || |||||| | |||||||| |||||||| |||||| |  |||||||||||||||| ||||||    
T  44171426 gcatactccctccggttattattataaacaaaagttaattttttaaattcattcaataaatgatgtatgt 44171495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 44171565 - 44171513
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    |||||||||||||||||||||| |||||| || |||||||| ||||||| ||||    
T  44171565 gtcactattataagcaaaagttgattttt-aggttcattcattaaatgatgtat 44171513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 5281281 - 5281213
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||||| |||||| |||| |||| |||| || | |||||||| ||||| |||||||    
T  5281281 atacaccctccggtcactaatataagtaaaaattcactttttagatacattcaattaatgatgtatgtg 5281213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 395
Target Start/End: Original strand, 11796589 - 11796649
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    |||||||||||||||||||||||| | ||||  | |||||||||| |||||  ||||||||    
T  11796589 cggtcactattataagcaaaagttgactttttcgattcattcaatgaatgatatatgtggt 11796649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 13689530 - 13689598
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||| ||||||||||||| ||||||||||| |  |||||| || | |||||||| ||||| |||||||    
T  13689530 atacatcatccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtatgtg 13689598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 13689674 - 13689610
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||| ||||||||||| |||| |||| || |||||||||| ||| | |||||| ||||    
T  13689674 tccggtcactaatataagcaaaaattcactttttagattcattcaattaataatgtatgttgtct 13689610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 24851557 - 24851497
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatg 384  Q
    |||||||| |||||||||||||||||||||||   ||| ||| || |||||||| ||||||    
T  24851557 catacaccctccggtcactattataagcaaaaaaccatattttaggttcattcattaaatg 24851497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 29588518 - 29588486
Alignment:
Q  333 tccggtcactattataagcaaaagttcattttt 365  Q
    |||||||||||||||||||||||||||| ||||    
T  29588518 tccggtcactattataagcaaaagttcaatttt 29588486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 41905933 - 41905873
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||||| | ||||||| | ||||||||||| ||||| ||| || ||||||||||||||||    
T  41905933 atacacccttcggtcacaaatataagcaaaaattcatgttttaggttcattcaataaatga 41905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 54338972 - 54338916
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataa 381  Q
    ||||||||| | |||| |||||||||||||| || |||||| || ||||||||||||    
T  54338972 atacaccattccgtcattattataagcaaaaatttattttttagattcattcaataa 54338916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 52923316 - 52923393
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatta 401  Q
    |||||||| ||||||||||||||||||||||| |||| |||| || |||||||||||||||| |||||||||| ||||    
T  52923316 catacaccctccggtcactattataagcaaaatttcactttttaggttcattcaataaatgatgtatgtggtccatta 52923393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 5431343 - 5431409
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||||| ||||||    
T  5431343 tccggtcactattataagcaaaaattcactttttagattcattcaataaatgaagtatgttgtctat 5431409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 42660491 - 42660427
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||||||||||| |   ||||||||||||||| |||||||||||||    
T  42660491 cggtcactattataagcaaaagttcattttttaaaatcattcaataaatgatgtatgtggtctat 42660427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 400
Target Start/End: Original strand, 19175590 - 19175657
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    |||||||||||||||||| |||| |||| |||| || |||||||||||||||| ||||||||||||||    
T  19175590 tccggtcactattataagtaaaatttcactttttaggttcattcaataaatgatgtatgtggtctatt 19175657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 52112881 - 52112944
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||||| |||| |  |||||||||||||||| |||||||||||||    
T  52112881 ggtcactattataagcaaaagttcactttttatattcattcaataaatgatgtatgtggtctat 52112944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 1602962 - 1602889
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||| ||||||||||||||||||| ||||||||| || |||||||| ||||||  |||||||||||||    
T  1602962 tacaccctccagtcactattataagcaaaaattcattttttaggttcattcattaaatgttgtatgtggtctat 1602889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 23944030 - 23944106
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    |||||||| ||||||||||| ||||||||||| ||||||||| || | |||||||| ||||| ||||||||| ||||    
T  23944030 catacaccctccggtcactaatataagcaaaaattcattttttagatacattcaattaatgatgtatgtggtttatt 23944106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 10256783 - 10256849
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||| ||||||||||||| |||| |||| |||| || |||||||||||||||| |||||||||||||    
T  10256783 tccgatcactattataagaaaaaattcactttttagattcattcaataaatgatgtatgtggtctat 10256849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 48083498 - 48083572
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| || |||||||||||||||||||| || || ||| || |||||||| ||||||| |||||||||||||    
T  48083498 atacaccctctggtcactattataagcaaaaattaatattttaggttcattcattaaatgatgtatgtggtctat 48083572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 5431478 - 5431413
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||||||| ||||||||||| || | |||| || |||||||||||||||| ||||||||||||    
T  5431478 tccggtcactaatataagcaaaaattaactttttagattcattcaataaatgatgtatgtggtcta 5431413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 14214675 - 14214607
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| |||||||||||||||||||||||  | | |||| || |||||||||||||||| |||||||    
T  14214675 atacaccctccggtcactattataagcaaaaacttactttttaggttcattcaataaatgatgtatgtg 14214607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 398
Target Start/End: Original strand, 34597527 - 34597587
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||||||||||||||| |||| |||| || ||||||||| |||||| ||||||||||||    
T  34597527 tcactattataagcaaaaattcactttttagattcattcaacaaatgatgtatgtggtcta 34597587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 51022711 - 51022771
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||||| ||| |||||||||||||||||||||| || ||| || ||||||||||||||||    
T  51022711 atacaccttccagtcactattataagcaaaagttgatattttagattcattcaataaatga 51022771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 8258088 - 8258017
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| ||||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||||||    
T  8258088 tacaccctccggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtggtct 8258017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 11989454 - 11989383
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||||||||||||| ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||    
T  11989454 tacaccatccggtcactaatataagcaaaagtttgatttttagattcattcattaaatgatgtatgtagtct 11989383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 14214544 - 14214603
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatg 384  Q
    ||||||| ||||||||||||||||||||||| |||| |||| || |||||||||| ||||    
T  14214544 atacaccctccggtcactattataagcaaaaattcactttttaggttcattcaattaatg 14214603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 19175735 - 19175664
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    |||||||| ||| ||||||||||||||||||| |  | |||| || |||||||||||||||| |||||||||    
T  19175735 catacaccctccagtcactattataagcaaaaatctactttttagattcattcaataaatgatgtatgtggt 19175664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 19580331 - 19580272
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    ||||||||||||||||| |||||||  |||||| || |||||||||||||||| ||||||    
T  19580331 tccggtcactattataaacaaaagtatattttttagattcattcaataaatgatgtatgt 19580272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 393
Target Start/End: Original strand, 34658381 - 34658448
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||||||||||||| ||||||||||| |||| ||||||| | |||| ||| ||||| |||||||    
T  34658381 tacaccatccggtcactaatataagcaaaaattcacttttcagatacatttaattaatgatgtatgtg 34658448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 399
Target Start/End: Original strand, 42915652 - 42915715
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||| |||||||||||||| |||||| || |||||||||||||||| | |||| ||||||    
T  42915652 ggtcactaatataagcaaaagttgattttttaggttcattcaataaatgatgcatgtagtctat 42915715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 1409187 - 1409121
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||| ||   |||| || |||||||||||||||| ||||| |||||||    
T  1409187 tccggtcactattataagcaaaaattatctttttagattcattcaataaatgatgtatgcggtctat 1409121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 2122703 - 2122641
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||| | ||||||| || |||||||| ||||||  |||||||||||||    
T  2122703 gtcactattataagcaaaaatccattttttagattcattcattaaatgttgtatgtggtctat 2122641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 34768416 - 34768350
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||||||||||| | |||| || ||||||||| |||| | ||||||| |||||    
T  34768416 tccggtcactattataagcaaaagttgactttttaggttcattcaacaaataatgtatgtgatctat 34768350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 38834613 - 38834679
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||| || |||||| || |||||| ||||||||| |||| | ||||||    
T  38834613 tccggtcactattataagcaaaaatttattttttagattcattaaataaatgatgtatatagtctat 38834679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 42660366 - 42660416
Alignment:
Q  340 actattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||||||||||||||| |||||| || |||||||||||||||| ||||    
T  42660366 actattataagcaaaagttgattttttagattcattcaataaatgatgtat 42660416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 33604138 - 33604065
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  33604138 catacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 33604065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 330 - 399
Target Start/End: Complemental strand, 47446772 - 47446703
Alignment:
Q  330 ccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||| ||||  ||| |||| |  |||||||||||||||| |||||| ||||||    
T  47446772 ccatccggtcactattataagtaaaaactcactttttaaattcattcaataaatgatgtatgtagtctat 47446703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 35156389 - 35156329
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||||||||||||||||| ||||||||||||||   |||| || |||||||| |||||||    
T  35156389 atacaccatccggtcactaatataagcaaaagttttatttttagattcattcattaaatga 35156329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 46412697 - 46412757
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    |||||||||||| |||||||||||||||||| || || ||| || |||||||| |||||||    
T  46412697 atacaccatccgatcactattataagcaaaaattaatattttagattcattcattaaatga 46412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 48022589 - 48022661
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  48022589 atacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 48022661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 639794 - 639865
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  639794 tacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 639865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 1035881 - 1035948
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||||||||| |||||| ||||||||||| | || |||  || |||||||||||||||| ||||||    
T  1035881 atacaccatccgatcactaatataagcaaaaatccagtttctagattcattcaataaatgatgtatgt 1035948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 11989302 - 11989377
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||| ||||||||||  ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||||    
T  11989302 catacaccctccggtcactgatataagcaaaagtttgatttttaggttcattcattaaatgacgtatgtagtctat 11989377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 15351707 - 15351782
Alignment:
Q  323 gcatacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||||| ||||||||| | ||||||||||| || || ||| |  |||||||||||||||| |||||| |||||    
T  15351707 gcatacaccctccggtcacaaatataagcaaaaatttatattttaaattcattcaataaatgatgtatgttgtcta 15351782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 35367623 - 35367556
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||| ||||||||||| ||||||||||| | ||||||| || | |||||||| ||||| |||||||    
T  35367623 tacaccctccggtcactactataagcaaaaatccattttttagatacattcaattaatgatgtatgtg 35367556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 393
Target Start/End: Complemental strand, 52923468 - 52923401
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||| || |||||||||||||||||||| |  | |||| || |||||||||||||||| |||||||    
T  52923468 tacaccctcaggtcactattataagcaaaaatctactttttaggttcattcaataaatgatgtatgtg 52923401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 6340565 - 6340623
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    |||||||||||||| |||  ||||||||| || ||||||||||||||||  ||||||||    
T  6340565 gtcactattataagtaaatattcattttttaggttcattcaataaatgatatatgtggt 6340623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 29302211 - 29302137
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||| ||||||||||| ||   |||| || |||||||| ||||||| |||||| ||||||    
T  29302211 atacaccctccggtcactaatataagcaaaaatttgatttttagattcattcattaaatgacgtatgtagtctat 29302137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 358
Target Start/End: Complemental strand, 33939444 - 33939410
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagtt 358  Q
    |||||||| ||||||||||||||||||||||||||    
T  33939444 catacaccctccggtcactattataagcaaaagtt 33939410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 14958683 - 14958748
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||||| | ||||||||||| ||||  ||| || |||||||||||||||| |||||| |||||    
T  14958683 tccggtcacaaatataagcaaaacttcaaattttagattcattcaataaatgatgtatgttgtcta 14958748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 355
Target Start/End: Complemental strand, 18353717 - 18353688
Alignment:
Q  326 tacaccatccggtcactattataagcaaaa 355  Q
    ||||||||||||||||||||||||||||||    
T  18353717 tacaccatccggtcactattataagcaaaa 18353688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 34597639 - 34597586
Alignment:
Q  345 tataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||||||| |||| |||| || ||||||||| |||||| ||||||||||||    
T  34597639 tataagcaaaaattcactttttagattcattcaacaaatgatgtatgtggtcta 34597586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 34953891 - 34953964
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||| ||||||||||||||||||| |  || ||| |  |||||||| ||||||| |||||||||||||    
T  34953891 tacaccctccagtcactattataagcaaaaatcaatattttaaattcattcattaaatgatgtatgtggtctat 34953964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 34954039 - 34953970
Alignment:
Q  328 caccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||| |||| |||||||||||||||||| || || ||| || |||||||||| ||||| |||| ||||||    
T  34954039 caccctccgatcactattataagcaaaaatttatattttagattcattcaattaatgatgtatatggtct 34953970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 47446626 - 47446699
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||| |||||| ||||||||||||| |||||||| |||||| || || |||| |||||| | ||||||| ||||    
T  47446626 atactccatccagtcactattataaacaaaagttaattttttaggttaattctataaattatgtatgtgatcta 47446699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 1409053 - 1409093
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcatt 375  Q
    |||||||||||||||||||||||||| |||| || ||||||    
T  1409053 cggtcactattataagcaaaagttcactttttagattcatt 1409093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 27939181 - 27939221
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcattttt 365  Q
    ||||| ||| ||||||||||||||||||||| |||||||||    
T  27939181 atacatcattcggtcactattataagcaaaaattcattttt 27939221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 37734775 - 37734835
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||    
T  37734775 tccggtcactaatataagcaaaaattcacttttaagatacattcaattaatgatgtatgtg 37734835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 37734919 - 37734847
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| ||||| |||||    
T  37734919 atacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgcggtct 37734847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 38468831 - 38468759
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||||||||||||| | |||||| |||| ||||| ||| || | |||| ||||||||| |||||| |||||    
T  38468831 tacaccatccggtcacaaatataagaaaaaattcatattttagatacatttaataaatgatgtatgttgtcta 38468759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 51022861 - 51022793
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| || |||||||||||||||||||| || || |||  | |||||||||||||||  |||||||    
T  51022861 atacaccctcgggtcactattataagcaaaatttaatatttttggttcattcaataaatggtgtatgtg 51022793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 2128508 - 2128433
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||| ||| ||||||||||||||||||| ||||| ||| || |||||||||||||||| |||||||||||||    
T  2128508 catacaccctccagtcactattataagcaaaaattcatgttttagattcattcaataaatgatgtatgtggtctat 2128433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 392
Target Start/End: Original strand, 4190631 - 4190690
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||||||||| | ||||||    
T  4190631 tccggtcactattataagaaaaaattcattttttagtttcattcaataaattatgtatgt 4190690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 22496945 - 22497019
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||| ||||||||||||||||||| || || ||| || |||||||| ||||||| |||||||||||||    
T  22496945 atacaccctccagtcactattataagcaaaaattaatattttagattcattcattaaatgatgtatgtggtctat 22497019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 4190761 - 4190700
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||| | |||| || |||||||||||||||| ||||| |||||||    
T  4190761 tcactattataagcaaaagttgactttttaggttcattcaataaatgatgtatgaggtctat 4190700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 42787753 - 42787681
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||| |||||||||||| ||||| ||||||||| || |||||||||||||||| || |||||| ||||||||||    
T  42787753 tccgatcactattataaacaaaaattcattttttaggttcattcaataaatgatgt-tgtggtttattatatag 42787681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 10872818 - 10872746
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||||||||||||||| || || ||| || |||||||||| ||||| |||| ||||||    
T  10872818 atacaccctccggtcactattataagcaaaaatttatattttagattcattcaattaatgatgtatatggtct 10872746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 36571379 - 36571443
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||||  ||||| || || ||||||||||||| |||||| ||||||    
T  36571379 cggtcactattataagcaaaagtttcttttttagatttattcaataaatgatgtatgtagtctat 36571443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 12708682 - 12708741
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatg 384  Q
    ||||||| ||||||||||||||||||||||| ||||||||  || |||||||| ||||||    
T  12708682 atacaccctccggtcactattataagcaaaaattcattttctaggttcattcattaaatg 12708741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 105509 - 105443
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||| ||||||||||||||| | |||| || ||||||||||| || | |||||||||||||    
T  105509 tccggtcacttttataagcaaaagttgactttttaggttcattcaatacattatgtatgtggtctat 105443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 611576 - 611650
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||| ||||| ||||||||||||||| |||||||  ||||| || || ||||||||||||| |||||| ||||||    
T  611576 atactccatctggtcactattataagtaaaagtttgttttttagattaattcaataaatgatgtatgtagtctat 611650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 611719 - 611653
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||||||||||| | |||| || || ||||| ||||| | |||||||||||||    
T  611719 tccggtcactattataagcaaaagttgactttttaggttaattcattaaataatgtatgtggtctat 611653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 40639847 - 40639777
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattata 403  Q
    ||||||||||||||||||||||| || |  ||| |  |||||||| ||||||| |||||||||||||||||    
T  40639847 tccggtcactattataagcaaaaattaacattttaaattcattcattaaatgatgtatgtggtctattata 40639777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 45736681 - 45736755
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||||||||||||||| |  ||  || || |||||||| ||||||| |||||||||||||    
T  45736681 atacaccctccggtcactattataagcaaaaatcgatagtttagattcattcattaaatgatgtatgtggtctat 45736755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 26367465 - 26367538
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||| ||||||||| | ||||||||||| | ||| ||| || |||||||||||||||| |||||| |||||    
T  26367465 atacaccctccggtcacaaatataagcaaaaatccatgttttagattcattcaataaatgatgtatgttgtcta 26367538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 36566774 - 36566721
Alignment:
Q  332 atccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    |||||||||||||||||||||||||||   |||| || ||||||||||||||||    
T  36566774 atccggtcactattataagcaaaagttttctttttagattcattcaataaatga 36566721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 39836998 - 39836937
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||  ||||||| | |||| || |||||||||||||||| |||||||||||||    
T  39836998 tcactattataaataaaagtttactttttagattcattcaataaatgatgtatgtggtctat 39836937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 40470563 - 40470490
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||| ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||||    
T  40470563 tacaccctccggtcactaatataagcaaaagtttgatttttagattcattcattaaatgacgtatgtagtctat 40470490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 394
Target Start/End: Complemental strand, 50603659 - 50603590
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtgg 394  Q
    ||||| ||| ||||||||||||||||||||| |  |||||| |  |||||||||||||||| ||||||||    
T  50603659 atacatcattcggtcactattataagcaaaaatctattttttaagttcattcaataaatgatgtatgtgg 50603590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 105366 - 105434
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||| |||||||||||||||| ||| ||||| |||| |||| || |||||| ||||||||| |||||||    
T  105366 atactccatccggtcactattgtaaacaaaaattcactttttagattcattgaataaatgatgtatgtg 105434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 35572146 - 35572074
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||||||||  | ||||||||||| ||||| |||  | |||||||||||||||  |||||||||||    
T  35572146 atacaccatccggtcataaatataagcaaaaattcatgttttgggttcattcaataaatgttgtatgtggtct 35572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 52931643 - 52931707
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||| ||||||||||| |||||| || || | |||||||| ||||| |||||||||||    
T  52931643 tccggtcactaatataagcaaaaattcattctttagatacattcaattaatgatgtatgtggtct 52931707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 13900232 - 13900283
Alignment:
Q  335 cggtcactattataagcaaaagttca-tttttcagtttcattcaataaatga 385  Q
    ||||||||||||||||||||| |||| ||||| || ||||||||||||||||    
T  13900232 cggtcactattataagcaaaaattcacttttttagattcattcaataaatga 13900283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 54595784 - 54595855
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtc 396  Q
    ||||||||| ||||||||||||||||||||| |  |  ||| || |||||||| ||||||| ||||||||||    
T  54595784 atacaccatacggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtc 54595855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 24722693 - 24722755
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||| || || ||| || |||||| | ||||||| |||||||||||||    
T  24722693 gtcactattataagcaaaaattaatattttagattcatttattaaatgatgtatgtggtctat 24722755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 39682615 - 39682677
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||| ||||  | |||||| || |||||| ||||||||| |||||||||||||    
T  39682615 gtcactattataagtaaaaaattattttttaggttcattgaataaatgatgtatgtggtctat 39682677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 42787610 - 42787684
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||| |||||||||||||||||||| |  |||||  || | ||||||||||||||  ||||| ||||||    
T  42787610 atacaccatctggtcactattataagcaaaaatcaattttgtagatccattcaataaatgatatatgtagtctat 42787684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 44037109 - 44037047
Alignment:
Q  344 ttataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    ||||||| ||||||||| |||  |  ||||||||||||||||  |||||||||||||||||||    
T  44037109 ttataagtaaaagttcactttatatgttcattcaataaatgatatatgtggtctattatatag 44037047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 50260925 - 50260999
Alignment:
Q  323 gcatacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||| |||||| |||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  50260925 gcatacaccctccggttactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 50260999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 331944 - 331879
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||| ||||||||||||||||||||||| || |  ||| || |||||||| ||||||| ||||    
T  331944 atacaccctccggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtat 331879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 7981150 - 7981211
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| | ||||||||||| ||||| ||| || |||||||||||||||| | |||||||||    
T  7981150 ggtcacaaatataagcaaaaattcatattttaggttcattcaataaatgatgcatgtggtct 7981211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 12745046 - 12744973
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| | ||||||||||||||||||||| || |  ||| || | |||||| ||||||| |||||||||||||    
T  12745046 tacacccttcggtcactattataagcaaaaattaacattttagatacattcattaaatgatgtatgtggtctat 12744973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 51239390 - 51239321
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||| ||||||||||| ||||||||||| |  |||||| || | |||||||| ||||| |||||||    
T  51239390 catacaccctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtatgtg 51239321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 52216025 - 52215952
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||||||||||||||| |  |  ||| || |||| ||| ||||||| |||||||||||||    
T  52216025 tacaccctccggtcactattataagcaaaaatcaacattttagattcactcattaaatgatgtatgtggtctat 52215952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 1086635 - 1086575
Alignment:
Q  345 tataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatata 405  Q
    |||||| |||| |||| |||| || |||||||||||||||| |||  ||||||||||||||    
T  1086635 tataagtaaaaattcactttttagattcattcaataaatgatgtacatggtctattatata 1086575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 21404039 - 21403970
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| ||||||||||| ||||||||||| | ||||||  || | |||||||| ||||| |||||||||||    
T  21404039 tacaccctccggtcactaatataagcaaaaatccatttt--agatacattcaattaatgatgtatgtggtct 21403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 38677560 - 38677592
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagtt 358  Q
    |||||| ||||||||||||||||||||||||||    
T  38677560 tacaccctccggtcactattataagcaaaagtt 38677592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 41349806 - 41349734
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttca-tttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| ||||||||||| ||||||||||| | || ||||| || | |||||||| ||||| |||||||||||    
T  41349806 tacaccctccggtcactaatataagcaaaaatccatttttttagatacattcaattaatgatgtatgtggtct 41349734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 45613464 - 45613496
Alignment:
Q  331 catccggtcactattataagcaaaagttcattt 363  Q
    ||||||||||||||||||||||||| |||||||    
T  45613464 catccggtcactattataagcaaaaattcattt 45613496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 51617477 - 51617405
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||  |||||||||||    
T  51617477 atacaccctccggtcactaatataagcaaaattccactttttagatacattcaattaatgttgtatgtggtct 51617405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 404
Target Start/End: Original strand, 43813127 - 43813198
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatat 404  Q
    ||||||||||||||||||||||| || | |||| || ||||||||||||||||||||||| |||||| ||||    
T  43813127 tccggtcactattataagcaaaaatttaatttttagattcattcaataaatgaagtatgtagtctataatat 43813198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 383
Target Start/End: Original strand, 18654244 - 18654302
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaat 383  Q
    ||||||| ||||||||||||||||||||||||||||||||| || ||| ||||||||||    
T  18654244 atacaccttccggtcactattataagcaaaagttcattttttaggttctttcaataaat 18654302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 399
Target Start/End: Complemental strand, 8169236 - 8169168
Alignment:
Q  331 catccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||| ||||||||||||||||||| | |||| || |||||||||||||||| |||||| ||||||    
T  8169236 catccggttactattataagcaaaagttaactttttagattcattcaataaatgatgtatgtagtctat 8169168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 11602903 - 11602839
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||| |||||||||| |||| || |||||||||||||||| |||||| ||||||    
T  11602903 cggtcactattataaacaaaagttcactttttagattcattcaataaatgatgtatgtagtctat 11602839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 392
Target Start/End: Original strand, 34840616 - 34840675
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||||| ||||||||||||||||||| |||| || |||||||||||||||| ||||||    
T  34840616 tccggtcattattataagcaaaagttcactttttagattcattcaataaatgatgtatgt 34840675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 36547724 - 36547658
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||| ||||||||  || |||||||| ||||||  |||||||||||||    
T  36547724 tccggtcactattataagcaaaaattcattttctaggttcattcattaaatgttgtatgtggtctat 36547658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 10095714 - 10095787
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||||||||||||||| || |  ||| || |||||||| ||||||| |||||||||||||    
T  10095714 tacaccctccggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtatgtggtctat 10095787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 31417663 - 31417595
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||| ||||||||||| | ||||||||||| ||||| ||| || |||||||||||||||| |||||||    
T  31417663 atacatcatccggtcacaaatataagcaaaaattcatgttttagattcattcaataaatgatgtatgtg 31417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 399
Target Start/End: Complemental strand, 34478374 - 34478307
Alignment:
Q  332 atccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||||||||| || |||||| || |||||| | ||||||| |||| ||||||||    
T  34478374 atccggtcactattataagcaaaaattaattttttagattcatttactaaatgatgtatttggtctat 34478307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 16777886 - 16777960
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||| |||||||||||||| | |||| || |||||| | ||||||| |||||| ||||||    
T  16777886 atacaccctccggtcactaatataagcaaaagtttaatttttagattcatttattaaatgatgtatgtagtctat 16777960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 18654540 - 18654614
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||| |||||| ||||||| | |||| || ||| |||||||||| | |||||||||||||    
T  18654540 atacaccctccggtcactactataagaaaaagtttactttttaggttctttcaataaataatgtatgtggtctat 18654614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 21099377 - 21099315
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||| ||||||||| |||| |  |||||||||||||||| |||||| ||||||    
T  21099377 gtcactattataagtaaaagttcactttttatattcattcaataaatgacgtatgtagtctat 21099315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 8169108 - 8169165
Alignment:
Q  342 tattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||   |||| || |||||||||||||||| |||||||||||||    
T  8169108 tattataagcaaaagttggctttttaggttcattcaataaatgatgtatgtggtctat 8169165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 25245289 - 25245216
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||| ||||||||||||||||||||||| |  |  ||| || |||||||| ||||||| ||||||||||||    
T  25245289 atacaccctccggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtcta 25245216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 34703590 - 34703517
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||| ||||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||| ||||||    
T  34703590 catacaccctccggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatatggtct 34703517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 11602770 - 11602830
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||||||||||||| ||||||| |||||| || |||||||| ||||| | |||||||    
T  11602770 tccggtcactattataagtaaaagttgattttttaggttcattcattaaattatgtatgtg 11602830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 12274804 - 12274884
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||| || |||||||||||||||||||| | ||  ||| |  |||||||||||||||| |||||||| |||| ||||||    
T  12274804 tacaccctctggtcactattataagcaaaaatccacattttatgttcattcaataaatgatgtatgtggcctataatatag 12274884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 10422954 - 10422887
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    ||||||| ||||||||||| ||||||||||| || | |||| || |||||||| ||||||| ||||||    
T  10422954 atacaccctccggtcactaatataagcaaaaatttaatttttagattcattcattaaatgacgtatgt 10422887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 12274955 - 12274868
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacaca 412  Q
    ||||||| |||||| |||||||||||||||| |  | |||| || ||||||||||| || | |||||||||||||  |||||| ||||    
T  12274955 atacaccctccggtaactattataagcaaaaatgtactttttagattcattcaatatataatgtatgtggtctatattataggccaca 12274868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 2360443 - 2360517
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||| ||||||||||| ||   |||| || |||||||| ||||||| |||||| ||||||    
T  2360443 atacaccctccggtcactaatataagcaaaaatttgatttttagattcattcattaaatgacgtatgtagtctat 2360517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 21857226 - 21857192
Alignment:
Q  331 catccggtcactattataagcaaaagttcattttt 365  Q
    ||||||||||||||||||||||||| |||||||||    
T  21857226 catccggtcactattataagcaaaaattcattttt 21857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 30457868 - 30457802
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||| ||||||||||||| ||||||||| |||| |  |||||||||||||||  |||||| ||||||    
T  30457868 tccgatcactattataagtaaaagttcactttttaaattcattcaataaatgttgtatgttgtctat 30457802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 31319662 - 31319588
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| |||| ||||||||||||| |||| |  |||||| || ||||||||| |||||| |||||| ||||||    
T  31319662 atacaccctccgatcactattataaggaaaaatatattttttagattcattcaaaaaatgatgtatgtagtctat 31319588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Complemental strand, 32599796 - 32599734
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||||||| |||| | || |||||||| ||||||| || ||||||||||    
T  32599796 gtcactgttataagcaaaagttgatttgttaggttcattcattaaatgatgtttgtggtctat 32599734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 34840799 - 34840733
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||| ||||||||||||||||||||| |  ||| || |||||||||||||| |  ||||||||||||    
T  34840799 tccgatcactattataagcaaaagttgacattttaggttcattcaataaataatctatgtggtctat 34840733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 8571377 - 8571450
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||| ||||||||||||||   |||| || |||||||| |||||||  ||||| ||||||    
T  8571377 tacaccctccggtcactaatataagcaaaagtttgatttttagattcattcattaaatgacatatgtagtctat 8571450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 10599126 - 10599069
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtgg 394  Q
    |||||||||||||| |||| |  |||||| || |||||||||||||||| ||||||||    
T  10599126 gtcactattataagtaaaaatctattttttaggttcattcaataaatgatgtatgtgg 10599069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 18654680 - 18654611
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||||||||||| | ||||| |||||| || || ||| ||||||||| |||| |||| ||||||||||    
T  18654680 gtcactattataagtacaagtttattttttagatttatttaataaatgatgtatatggtatattatatag 18654611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 21103391 - 21103318
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| |||| ||||||||||||||||||   ||||||  || |||||||| ||||||  |||||||||||||    
T  21103391 tacaccctccgatcactattataagcaaaaaaccattttctaggttcattcattaaatgttgtatgtggtctat 21103318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 26824900 - 26824965
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||| ||||||||||| ||||||||||| || | |||| || |||||||| ||||||| ||||    
T  26824900 atacaccctccggtcactagtataagcaaaaatttaatttttagattcattcattaaatgacgtat 26824965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 399
Target Start/End: Original strand, 28752090 - 28752147
Alignment:
Q  342 tattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||| | |||| | ||||||||| ||||||| |||| ||||||||    
T  28752090 tattataagcaaaagttaactttttaatttcattcattaaatgatgtatttggtctat 28752147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 37491407 - 37491338
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    ||||||||||||| |||||||| | |||| || |||||| ||||||||| |||| |||||  ||||||||    
T  37491407 gtcactattataatcaaaagtttactttttagattcatttaataaatgatgtatatggtcacttatatag 37491338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 38238777 - 38238850
Alignment:
Q  325 atacaccatccggtcactattataagc-aaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| ||||||| |||| |||| |||| || | |||||||| ||||| |||||||||||    
T  38238777 atacaccctccggtcactaatataagcaaaaatttcactttttagatacattcaattaatgatgtatgtggtct 38238850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 2943207 - 2943279
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||| | ||||||||||||||||||||| |  |  ||| || |||||||| ||||||| ||||||||||||    
T  2943207 tacacccttcggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtcta 2943279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 15051229 - 15051161
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||| | ||||||||||| ||||| ||| |  |||||||||||||| | |||||||    
T  15051229 atacaccctccggtcacaaatataagcaaaaattcatgttttaaattcattcaataaataatgtatgtg 15051161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 21886461 - 21886521
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||||| |||||||| |||||||||||||| || || ||| || |||||||||| |||||    
T  21886461 atacaccctccggtcattattataagcaaaaatttatattttagattcattcaattaatga 21886521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 23797340 - 23797416
Alignment:
Q  323 gcatacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||| | ||||||||||||||||||||| ||    ||| || |||||||| ||||||| |||||| ||||||    
T  23797340 gcatacacccttcggtcactattataagcaaaattttgcattttagattcattcattaaatgatgtatgtagtctat 23797416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 40417044 - 40416980
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||| ||||||    
T  40417044 tccggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatatggtct 40416980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 52)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 7313977 - 7313902
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||| || |||||||||||||||||||||||||| | |||| || |||| ||||||||||| |||||||||||||    
T  7313977 catactccctccggtcactattataagcaaaagttgactttttaggttcaatcaataaatgatgtatgtggtctat 7313902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 33075211 - 33075137
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||| |||||||||||||||||||| || || ||| || |||||||| ||||||| |||||||||||||    
T  33075211 atacaccatctggtcactattataagcaaaaattaatattttaggttcattcattaaatgatgtatgtggtctat 33075137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 412
Target Start/End: Original strand, 27895901 - 27895977
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacaca 412  Q
    ||||||||||||||| ||||||||||||||| || |||||| ||||||||| |||||| ||||| |||||||| ||||    
T  27895901 cggtcactattataaacaaaagttcattttttagattcatttaataaatgatgtatgtagtcta-tatataggtcaca 27895977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Complemental strand, 1098774 - 1098699
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||| || |||||||||||||||||||||||||| |||||| || |||||| ||||||| | |||||| ||||||    
T  1098774 catactccctccggtcactattataagcaaaagtttattttttagattcatttaataaataatgtatgtagtctat 1098699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 25713836 - 25713770
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||| |||||||| |||||||| |||||| || ||||||||||||||||  ||||||||||||    
T  25713836 tccggtcattattataaacaaaagttgattttttagattcattcaataaatgatatatgtggtctat 25713770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 1098635 - 1098696
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||| ||||||| | |||| || |||||||||||||||| |||||||||||||    
T  1098635 tcactattataagtaaaagttgactttttagattcattcaataaatgatgtatgtggtctat 1098696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 25408537 - 25408610
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||| ||||||||| | ||||||||||| ||||| ||| || |||||||||||||||| |||||| |||||    
T  25408537 atacaccctccggtcacaaatataagcaaaaattcatattttagattcattcaataaatgatgtatgttgtcta 25408610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 43506241 - 43506172
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||| || |||||||||||||||||||| |||| |||| || |||||||| ||||||| |||||||    
T  43506241 catacaccctctggtcactattataagcaaaatttcactttttagattcattcattaaatgatgtatgtg 43506172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 18261602 - 18261662
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||||||||||||||||||||||| |||  || |||||||||||||| | |||||||    
T  18261602 tccggtcactattataagcaaaagttcactttatagattcattcaataaataatgtatgtg 18261662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 402
Target Start/End: Complemental strand, 23421057 - 23420977
Alignment:
Q  322 ggcatacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattat 402  Q
    ||||||||||||||| |||||| || || |||||||| | |||| |  |||||||||||||||| ||||| ||||||||||    
T  23421057 ggcatacaccatccgatcactaatagaaacaaaagtttactttttaagttcattcaataaatgatgtatgcggtctattat 23420977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 25408689 - 25408617
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||||||||  | ||||||||||| || || ||| || |||||||||||||||| |||||||||||    
T  25408689 atacaccatccggtcataaatataagcaaaaatttatgttttagattcattcaataaatgatgtatgtggtct 25408617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 2673851 - 2673922
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    ||||||||||||||||||||  || | |||| || | |||||||||||||| ||||||||||||| ||||||    
T  2673851 cggtcactattataagcaaattttgactttttaggtacattcaataaatgatgtatgtggtctataatatag 2673922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 396
Target Start/End: Complemental strand, 25792984 - 25792921
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtc 396  Q
    ||||||||||||||||||||||| || | |||| || |||||||| ||||||| ||||||||||    
T  25792984 tccggtcactattataagcaaaaatttactttttaggttcattcattaaatgatgtatgtggtc 25792921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 20019894 - 20019820
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||| ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||||    
T  20019894 atacaccctccggtcactaatataagcaaaagtttgatttttagattcattcattaaatgacgtatgtagtctat 20019820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 412
Target Start/End: Original strand, 42247551 - 42247633
Alignment:
Q  330 ccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacaca 412  Q
    |||||||||||||||||||||||||  || | |||| |  |||||||||||||||| ||| |||||||||  |||||| ||||    
T  42247551 ccatccggtcactattataagcaaattttgactttttatgttcattcaataaatgatgtacgtggtctatattataggccaca 42247633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 399
Target Start/End: Complemental strand, 13654645 - 13654580
Alignment:
Q  334 ccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||||||| |||| |||| |  |||||||||||||||| |||| | ||||||    
T  13654645 ccggtcactattataagcaaaaattcactttttaaattcattcaataaatgatgtatttagtctat 13654580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 25358060 - 25358125
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||||||||||||||| |||| || |||||| || |||||||||||||||| | ||||| ||||    
T  25358060 tccggtcactattataagtaaaaatttatttttaagattcattcaataaatgatgaatgtgatcta 25358125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 26300104 - 26300177
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||| ||||||||||| ||||||||||| || | |||| || | |||||||| ||||| |||||||||||    
T  26300104 catacaccctccggtcactaatataagcaaaaatttactttttagatacattcaattaatgatgtatgtggtct 26300177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 40515229 - 40515282
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaa 386  Q
    |||||||||||||||||| ||||||| | |||| || |||||||||||||||||    
T  40515229 tccggtcactattataagtaaaagttgactttttagattcattcaataaatgaa 40515282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 3851509 - 3851441
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||||| ||||||||||| ||||||||| || | |||| ||| ||||| |||||||    
T  3851509 atacaccctccggtcactaatataagcaaaaattcattttttagatacatttaattaatgatgtatgtg 3851441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 23914835 - 23914907
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  23914835 atacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 23914907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 40100225 - 40100165
Alignment:
Q  333 tccggtcactattataagcaaaagttca-tttttcagtttcattcaataaatgaagtatgt 392  Q
    ||||||||||||||||||||||| |||| ||||| || |||||||| ||||||| ||||||    
T  40100225 tccggtcactattataagcaaaaattcatttttttagattcattcagtaaatgatgtatgt 40100165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 42013824 - 42013888
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||||||    
T  42013824 tccggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtggtct 42013888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 43506112 - 43506172
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtc 396  Q
    |||||||||||||||||||| |||| |||| || |||| ||| ||||||| ||||||||||    
T  43506112 ggtcactattataagcaaaatttcactttttagattcaatcattaaatgatgtatgtggtc 43506172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 412
Target Start/End: Complemental strand, 13356283 - 13356196
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacaca 412  Q
    ||||||| |||||||| |||||||||||||| |  | |||| |  |||||||||||||||| |||||||||  |||| ||||| ||||    
T  13356283 atacaccctccggtcattattataagcaaaaatctactttttaagttcattcaataaatgatgtatgtggttcattaaataggccaca 13356196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 13654511 - 13654574
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtc 396  Q
    |||||||||||||||||| |||  || | |||| || |||||||||||||||| ||||||||||    
T  13654511 tccggtcactattataagtaaatattgactttttaggttcattcaataaatgatgtatgtggtc 13654574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 11262332 - 11262394
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||||||    
T  11262332 cggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtggtct 11262394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Original strand, 13391536 - 13391606
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    ||||||||||||||| ||||||  | |||| || |||||||||||||||| |||| ||||| || ||||||    
T  13391536 ggtcactattataagtaaaagtcaactttttagattcattcaataaatgatgtatttggtcaataatatag 13391606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 17225164 - 17225218
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaag 387  Q
    |||||||  ||||||||||||||||| | |||| || ||||||||||||||||||    
T  17225164 tccggtcgttattataagcaaaagttgactttttaggttcattcaataaatgaag 17225218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 17967450 - 17967380
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||||||||||| ||||| || || ||| |  |||||||||||||||| ||||||||||| | ||||||    
T  17967450 ggtcactattataaacaaaaattgatattttatattcattcaataaatgatgtatgtggtctttaatatag 17967380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 33684032 - 33684102
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    |||||||||||||| |||||||||||||| | ||||| ||| || |||||| ||||| ||  |||||||||    
T  33684032 atacaccatccggtaactattataagcaataattcatattttaggttcatttaataattgttgtatgtggt 33684102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 40515319 - 40515277
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcatt 375  Q
    |||||||||||||||||||||||||||| |||| || ||||||    
T  40515319 tccggtcactattataagcaaaagttcactttttagattcatt 40515277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 1996842 - 1996915
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||| ||||||||||| ||   |||| || |||||||| ||||||| |||||| ||||||    
T  1996842 tacaccctccggtcactaatataagcaaaaatttgatttttagattcattcattaaatgacgtatgtagtctat 1996915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 3100412 - 3100473
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||| || |  ||| || |||||||||||||||| |||||| ||||||    
T  3100412 tcactattataagcaaaaattaacattttagattcattcaataaatgatgtatgtagtctat 3100473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 6763843 - 6763778
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||| ||||||||||| ||||||||||| | ||||||  || |||||||||| ||||| ||||    
T  6763843 atacaccctccggtcactaatataagcaaaaatccattttctagattcattcaattaatgatgtat 6763778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 9707079 - 9707140
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaa 386  Q
    ||||||| ||| ||||||||||||||||||| || | |||  || |||||||||||||||||    
T  9707079 atacaccctccagtcactattataagcaaaaatttactttctaggttcattcaataaatgaa 9707140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 27314470 - 27314543
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||| ||||||||||| ||   |||| || |||||||| ||||||| |||||| ||||||    
T  27314470 tacaccctccggtcactaatataagcaaaaatttggtttttagattcattcattaaatgacgtatgtagtctat 27314543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 71254 - 71318
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    |||||| ||||||||||||||||||||||| |  || ||| || |||||||||| ||||| ||||    
T  71254 tacaccctccggtcactattataagcaaaaatctatattttagattcattcaattaatgatgtat 71318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 3851357 - 3851429
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| |||| |||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  3851357 atacaccctccgatcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 3851429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 7724955 - 7725027
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||| |||||||| || ||||||||||||||   |||| || |||||||| ||||||| |||||| |||||    
T  7724955 tacaccctccggtcattaatataagcaaaagtttgatttttaggttcattcattaaatgacgtatgtagtcta 7725027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 7725100 - 7725028
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| |||||||| || ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||    
T  7725100 atacaccctccggtcattaatataagcaaaagtttgatttttaggttcattcattaaatgacgtatgtagtct 7725028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 11262466 - 11262406
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||||||| ||||||||||| ||||||||  || | |||||||| ||||| |||||||    
T  11262466 tccggtcactaatataagcaaaaattcattttgtagatacattcaattaatgatgtatgtg 11262406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 12750264 - 12750196
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||| | ||||||||||| ||||| ||| |  |||||||||||||| | |||||||    
T  12750264 atacaccctccggtcacaaatataagcaaaaattcatgttttaaattcattcaataaataatgtatgtg 12750196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 13356099 - 13356155
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaata 380  Q
    |||||| | ||||||||||||||||||||||| || | |||| || |||||||||||    
T  13356099 catacatcctccggtcactattataagcaaaattttactttttaggttcattcaata 13356155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 14772691 - 14772627
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||| |||||||||||||||||||||| || || ||| || || ||||||| ||||| ||||    
T  14772691 tacaccagccggtcactattataagcaaaactttatattttagattaattcaattaatgatgtat 14772627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 19531295 - 19531363
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||| | ||||||||||| |||| |||| || | |||||||| ||||| |||||||    
T  19531295 atacaccctccggtcacaaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtg 19531363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 19531439 - 19531375
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||| |||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||||||    
T  19531439 tccgatcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtggtct 19531375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 26045260 - 26045320
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaa 386  Q
    |||||| |||||| |||||||||||||||| || || ||| || |||||||||| ||||||    
T  26045260 tacaccctccggttactattataagcaaaaatttatattttagattcattcaattaatgaa 26045320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 26141750 - 26141782
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagtt 358  Q
    |||||| ||||||||||||||||||||||||||    
T  26141750 tacaccctccggtcactattataagcaaaagtt 26141782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 36864560 - 36864508
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    |||| ||||||||||||  ||||||||| |||| || ||||||||||||||||    
T  36864560 tccgatcactattataaataaaagttcactttttagattcattcaataaatga 36864508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 37944604 - 37944664
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||    
T  37944604 tccggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtg 37944664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 37944748 - 37944680
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||| ||| ||||||||| ||||||||||| || |||||| || | |||||||| ||||| |||||||    
T  37944748 atacaacattcggtcactaatataagcaaaaatttattttttagatacattcaattaatgatgtatgtg 37944680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 32316412 - 32316486
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||||||||||||||| ||||||||  || |||||||| ||||||  |||||||||||||    
T  32316412 atacaccctccggtcactattataagcaaaaattcattttctaggttcattcattaaatgttgtatgtggtctat 32316486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 26229590 - 26229517
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||||||||||||||| ||||||||| || |||||||| |||||   |||||||||||||    
T  26229590 tacaccctccggtcactattataagcaaaaattcattttttaggttcattcattaaatattgtatgtggtctat 26229517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 3123897 - 3123970
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    ||||||||||||||||  | ||||| ||||||||||| ||| || |||||||||||||||| |||||| |||||    
T  3123897 atacaccatccggtcataaatataaacaaaagttcatattttagattcattcaataaatgatgtatgttgtcta 3123970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 15446923 - 15446844
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatata 405  Q
    |||| ||| |||||||||||||||| |||| ||||||||| || |||||| | ||||||| |||| | ||||||||||||    
T  15446923 tacatcattcggtcactattataagtaaaaattcattttttaggttcatttattaaatgatgtatatagtctattatata 15446844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 15119771 - 15119845
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| | ||||||||||||||||||||| || |  ||| || |||||||| ||||||| |||||||||||||    
T  15119771 atacacccttcggtcactattataagcaaaaattaacattttagattcattcattaaatgatgtatgtggtctat 15119845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 27964286 - 27964352
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||| |||||||||||| || | |||| || |||||||||||||| | |||||||||||||    
T  27964286 tccggtcacttttataagcaaaaattgactttttaggttcattcaataaattatgtatgtggtctat 27964352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 41824268 - 41824322
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||||||||||||||| ||||||||| || |||||||||||||| | ||||||    
T  41824268 tcactattataagcaaaaattcattttttagattcattcaataaattatgtatgt 41824322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 41824398 - 41824332
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||| |||||| |||| || | |||| || |||||||||||||||| |||||||||||||    
T  41824398 tccggtcactactataagtaaaaattgactttttaggttcattcaataaatgatgtatgtggtctat 41824332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 1961454 - 1961381
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||| |||||||||||||||||||| |  |  ||| || |||||||| ||||||| |||||||||||||    
T  1961454 tacaccatcgggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtctat 1961381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 379
Target Start/End: Original strand, 15446774 - 15446827
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaat 379  Q
    |||||| ||||||||||||||||||||||| ||||||||| |  ||||||||||    
T  15446774 tacaccctccggtcactattataagcaaaaattcattttttaaattcattcaat 15446827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 37195046 - 37195118
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| |||||||||||||| || ||| || |||| ||||| ||||| |||| ||||||    
T  37195046 atacaccctccggtcactaatataagcaaaagttaatattttagattcactcaattaatgatgtatatggtct 37195118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 44274679 - 44274615
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||  ||||||||||| |||| |||| || |||||||||||||||| |||||| ||||    
T  44274679 tccggtcactgatataagcaaaaattcactttttagattcattcaataaatgatgtatgtagtct 44274615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 3124041 - 3123982
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    ||||||||| | ||||||||||| ||||| ||| || |||||||||||||||| ||||||    
T  3124041 tccggtcacaaatataagcaaaaattcatgttttagattcattcaataaatgatgtatgt 3123982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 10221967 - 10222033
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||| ||||||||| ||||||| ||||| ||||| ||| |  |||||||||||||||| ||||||    
T  10221967 tacaccctccggtcacaattataaacaaaaattcatgttttatattcattcaataaatgatgtatgt 10222033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 18731404 - 18731342
Alignment:
Q  338 tcactattataagcaaaagttc-atttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||||||||  ||||| || |||||||||||||| | |||||| ||||||    
T  18731404 tcactattataagcaaaagttcttttttttagattcattcaataaataatgtatgtagtctat 18731342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 26836302 - 26836228
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||| |||||||| |||| ||||||||||| | ||| ||| || ||||||||||||||||  ||||| |||||    
T  26836302 catacatcatccggttactaatataagcaaaaatccatattttagattcattcaataaatgatttatgttgtcta 26836228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Complemental strand, 36547479 - 36547413
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||| |||||||||||| ||||| || || || ||| |||||||||||||||| ||||||| |||||    
T  36547479 tccgatcactattataaacaaaatttaatattgcaggttcattcaataaatgatgtatgtgatctat 36547413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 406
Target Start/End: Original strand, 44089419 - 44089501
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||||| |||| |||||||||||||||||| | ||| ||| |  |||||| ||||||||| |||  |||||||| ||||||    
T  44089419 catacaccctccgatcactattataagcaaaaatacatcttttatattcattgaataaatgatgtacatggtctataatatag 44089501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 44274544 - 44274610
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||||| |||||||| |  ||| || ||||||||||||||||  ||||| ||||||    
T  44274544 tccggtcactattataaacaaaagttgacattttagattcattcaataaatgatatatgtagtctat 44274610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 44587645 - 44587711
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||| ||||||||||||||    |||||| || |||||| ||||||||| |||||||||||||    
T  44587645 tccggtcattattataagcaaaatactattttttaggttcattgaataaatgatgtatgtggtctat 44587711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 26234170 - 26234137
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagtt 358  Q
    ||||||| ||||||||||||||||||||||||||    
T  26234170 atacaccctccggtcactattataagcaaaagtt 26234137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 38594491 - 38594422
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||| ||||||||||| ||||||||||| |  |||||| || | |||||||| ||||| |||||||    
T  38594491 catacaccctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtatgtg 38594422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 43543056 - 43542999
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||| | ||||||||  ||||||||||||| || |||||||||||||||| ||||    
T  43543056 tccggtctccattataagagaaagttcattttttaggttcattcaataaatgatgtat 43542999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Complemental strand, 44094933 - 44094872
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||||||||| ||||| |  |||||| ||||||||  |||||| ||||||    
T  44094933 tcactattataagcaaaagttcgttttttaaattcatttaataaatgttgtatgtagtctat 44094872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 399
Target Start/End: Original strand, 4860239 - 4860307
Alignment:
Q  331 catccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||| ||||||||||||||||||| ||   ||||||| |||||| ||||| ||| |||| ||||||||    
T  4860239 catccagtcactattataagcaaaatttacattttcagattcattgaataactgatgtatctggtctat 4860307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 5574256 - 5574184
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| ||||||||||| |  | |||| || | |||||||| ||||| |||||||||||    
T  5574256 atacaccctccggtcactaatataagcaaaaatctactttttagatacattcaattaatgatgtatgtggtct 5574184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 12242386 - 12242314
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||| | ||||||||||| | ||| ||| || |||||||| ||||||| |||||| ||||    
T  12242386 atacaccctccggtcacaaatataagcaaaattccatattttagattcattcattaaatgatgtatgtagtct 12242314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 14308653 - 14308721
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| |||| |||| | ||||||||||  ||||| ||| || |||||||||||||||| |||||||    
T  14308653 atacaccctccgatcacaaatataagcaaacattcatgttttagattcattcaataaatgatgtatgtg 14308721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 14952901 - 14952830
Alignment:
Q  335 cggtcactattataagcaaaagttca-tttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||||| |||||||||||| || | ||||| |||| |||||| ||||||| ||||||| ||||||||||||    
T  14952901 cggtcactcttataagcaaaatttgacttttttagtt-cattcattaaatgatgtatgtgatctattatatag 14952830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 23378087 - 23378015
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||| |||||||| |||||||||||||| || || ||| || |||||| | ||||||| ||||||| ||||    
T  23378087 tacaccctccggtcattattataagcaaaaattaatattttagattcatttattaaatgatgtatgtgatcta 23378015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 26229439 - 26229499
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatg 384  Q
    |||||||| |||||||||||||||||||||||  |||| ||  || |||||||| ||||||    
T  26229439 catacaccctccggtcactattataagcaaaaaatcatattgtaggttcattcattaaatg 26229499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 38598086 - 38598018
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||||| ||||||||||| |  |||||| || | |||||||| ||||| |||||||    
T  38598086 atacaccctccggtcactaatataagcaaaaatctattttttagatacattcaattaatgatgtatgtg 38598018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 4518 - 4445
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||||||||||||||| ||||||||  || |||||||| ||||||  |||||||||||||    
T  4518 tacaccctccggtcactattataagcaaaaattcattttctaggttcattcattaaatgttgtatgtggtctat 4445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 397
Target Start/End: Original strand, 13276479 - 13276552
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||| ||||||||| | ||||||||||| ||||| ||| || |||||||||||||||| |||||||||||    
T  13276479 catacaccctccggtcacaaatataagcaaaaattcatgttttaggttcattcaataaatgatgtatgtggtct 13276552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 30422328 - 30422401
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||| |||||||||||||||||||| ||||||||  || |||||||| ||||||  |||||||||||||    
T  30422328 tacaccatctggtcactattataagcaaaaattcattttctaggttcattcattaaatgttgtatgtggtctat 30422401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 8449567 - 8449642
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||| |||||||||||||||||| || || |||  | || ||||||||||||| |||||||||||||    
T  8449567 catacaccatccgatcactattataagcaaaaattaatattttggatttattcaataaatgatgtatgtggtctat 8449642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 399
Target Start/End: Original strand, 8458371 - 8458446
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||| |||||||||||||||||| || || |||  | || ||||||||||||| |||||||||||||    
T  8458371 catacaccatccgatcactattataagcaaaaattaatattttggatttattcaataaatgatgtatgtggtctat 8458446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 32254966 - 32254895
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| |||| ||||||||||||||||||||| || ||| || |||||||| ||||||| |||||||||||    
T  32254966 tacaccctccgatcactattataagcaaaagttaatattttagattcattcattaaatgatgtatgtggtct 32254895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 14173395 - 14173463
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatat 404  Q
    |||||||||||||||||||| |  | |||| || ||||||||||||||||||||||| |||||| ||||    
T  14173395 ggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtatgtagtctataatat 14173463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 14177931 - 14177999
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatat 404  Q
    |||||||||||||||||||| |  | |||| || ||||||||||||||||||||||| |||||| ||||    
T  14177931 ggtcactattataagcaaaaatctaatttttagattcattcaataaatgaagtatgtagtctataatat 14177999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 15718539 - 15718469
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    ||||||| || | |||||||||||||||||| |||| |||| |  |||||||||||||||| |||||||||    
T  15718539 atacaccctctgatcactattataagcaaaaattcacttttaaaattcattcaataaatgatgtatgtggt 15718469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 412
Target Start/End: Original strand, 15836534 - 15836620
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatataggacaca 412  Q
    |||||||||||||||  | ||||||||||| ||||| ||  || |||||||||||||||| |||||| |||||  ||||||| ||||    
T  15836534 tacaccatccggtcataaatataagcaaaaattcatattgtagattcattcaataaatgatgtatgttgtctacaatataggtcaca 15836620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 18886302 - 18886376
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||| ||||||||||||||||||| || || ||| || |||||||| |||||||  ||||||||||||    
T  18886302 atacaccctccagtcactattataagcaaaaattaatattttagattcattcattaaatgatatatgtggtctat 18886376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 31632245 - 31632183
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    |||||||||||||||||| ||||||| | |||| || |||||| ||||||||| |||||||||    
T  31632245 tccggtcactattataagtaaaagttgactttttaggttcatttaataaatgatgtatgtggt 31632183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 395
Target Start/End: Complemental strand, 18491799 - 18491736
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaa-tgaagtatgtggt 395  Q
    |||||||||||||||||| ||||||| | |||| || ||||||||||||| ||| |||||||||    
T  18491799 tccggtcactattataagtaaaagttgactttttaggttcattcaataaattgatgtatgtggt 18491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 34379881 - 34379810
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtc 396  Q
    ||||||||| ||||||||||||||||||||| |  |  ||| || |||||||| ||||||| ||||||||||    
T  34379881 atacaccatacggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtc 34379810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 398
Target Start/End: Complemental strand, 13277169 - 13277095
Alignment:
Q  324 catacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||||| ||||||||| | ||||| ||||| || || ||| || |||||||||||||||| |||||| |||||    
T  13277169 catacaccctccggtcacaaatataaacaaaaatttatattttagattcattcaataaatgatgtatgttgtcta 13277095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 392
Target Start/End: Original strand, 13462928 - 13462994
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgt 392  Q
    |||||| |||||||||||||| |||||||||||   |||| || | |||||||||||||| ||||||    
T  13462928 tacaccctccggtcactattagaagcaaaagtttgctttttagatccattcaataaatgatgtatgt 13462994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 13463078 - 13463008
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    |||| ||||| ||| |||||||||||||||| || | |||| || |||||||| ||||||| |||||||||    
T  13463078 atactccatctggtaactattataagcaaaaattgactttttaggttcattcattaaatgatgtatgtggt 13463008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 3203673 - 3203730
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||||||||||||||||||| |  |||||| || |||||||||| ||||| ||||    
T  3203673 tccggtcactattataagcaaaaatcaattttttaggttcattcaatgaatgatgtat 3203730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 4844284 - 4844357
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| | |||||| || |||||||||||  |||||||| || | |||||||| ||||| |||||||||||||    
T  4844284 tacacccttcggtcagtaatataagcaaaaaatcattttttagatacattcaattaatgatgtatgtggtctat 4844357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 24110222 - 24110271
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaa 382  Q
    |||||||||||||||||||||||||| |||||| || || ||||| ||||    
T  24110222 tccggtcactattataagcaaaagttgattttttaggttaattcattaaa 24110271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 8449714 - 8449662
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||||||||||||||||||||| || || ||| || |||||||||| |||||    
T  8449714 tccggtcactattataagcaaaaattaatattttagattcattcaattaatga 8449662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 8458518 - 8458466
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||||||||||||||||||||| || || ||| || |||||||||| |||||    
T  8458518 tccggtcactattataagcaaaaattaatattttagattcattcaattaatga 8458466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 15517226 - 15517162
Alignment:
Q  335 cggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| |||||||||||||| |  || ||| || |||||||| ||||||| |||||||||||||    
T  15517226 cggtcattattataagcaaaaatcaatattttagattcattcattaaatgatgtatgtggtctat 15517162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 15836685 - 15836617
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||| | |||||| |||| | ||| ||| || |||||||||||||||| |||||||    
T  15836685 atacaccctccggtcacaaatataagtaaaaatacatgttttagattcattcaataaatgatgtatgtg 15836617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 18097055 - 18097087
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagtt 358  Q
    |||||| ||||||||||||||||||||||||||    
T  18097055 tacaccctccggtcactattataagcaaaagtt 18097087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 21506457 - 21506525
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||    
T  21506457 atacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtg 21506525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 24111240 - 24111180
Alignment:
Q  330 ccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    ||||||| ||| ||||||||| ||||||||| |||| || || ||||||||||||| ||||    
T  24111240 ccatccgttcattattataagtaaaagttcaatttttagatttattcaataaatgatgtat 24111180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 31398371 - 31398339
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagtt 358  Q
    |||||| ||||||||||||||||||||||||||    
T  31398371 tacaccctccggtcactattataagcaaaagtt 31398339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 24750 - 24678
Alignment:
Q  327 acaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||| ||||||||||||||||||||||| || || ||| || |||||||| ||||||| |||||||||||||    
T  24750 acaccctccggtcactattataagcaaaaattaatattttagattcattcattaaatgatgtatgtggtctat 24678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 400
Target Start/End: Original strand, 7410559 - 7410634
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    ||||||| ||| ||||||||||||||||||| || |||| | || ||||||||||||||||  |||||||||||||    
T  7410559 atacaccctccagtcactattataagcaaaatttaatttattagattcattcaataaatgatatatgtggtctatt 7410634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 24820435 - 24820375
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||||||||||||||||||| |||  |||| || |||||||||||||||| |||||||    
T  24820435 tccggtcactattataagcaaaaattctctttttagattcattcaataaatgatgtatgtg 24820375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 24820303 - 24820362
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    |||||||||||||||||||| |||| || | || |||||||||||||||| |||||||||    
T  24820303 ggtcactattataagcaaaaattcacttcttaggttcattcaataaatgatgtatgtggt 24820362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 24418883 - 24418949
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||||||| || |||||| | |||| |  |||||||||||||||| |||||||||||||    
T  24418883 tccggtcactattataggctaaagttgactttttaagttcattcaataaatgatgtatgtggtctat 24418949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 28882666 - 28882728
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    ||||||||||||||| |||||||||  | |||| || |||||||||||||||| |||||||||    
T  28882666 tccggtcactattatgagcaaaagtctactttttagattcattcaataaatgatgtatgtggt 28882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 397
Target Start/End: Complemental strand, 29424131 - 29424057
Alignment:
Q  323 gcatacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||| |||| ||||||||| | ||||||||||| ||||| ||| || |||||||||||||||| |||||| ||||    
T  29424131 gcatgcaccctccggtcacaaatataagcaaaaattcatattttagattcattcaataaatgatgtatgttgtct 29424057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 40640272 - 40640346
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||||||||||||||| ||  | ||| || |||||||| ||||||| ||| |||||||||    
T  40640272 atacaccctccggtcactattataagcaaaactttgtattttagattcattcattaaatgatgtacgtggtctat 40640346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 412
Target Start/End: Complemental strand, 6260744 - 6260668
Alignment:
Q  336 ggtcactattataagcaaaagttca-tttttcagtttcattcaataaatgaagtatgtggtctattatataggacaca 412  Q
    |||||||||||||||||||| |||| ||||| || ||||||||||||||||| ||| || |||| |||||||| ||||    
T  6260744 ggtcactattataagcaaaaattcatttttttagattcattcaataaatgaaatatatgatcta-tatataggtcaca 6260668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 7428901 - 7428954
Alignment:
Q  340 actattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||||||||||| ||||| ||| || |||||||||||||||| |||||||    
T  7428901 actattataagcaaaaattcatattttaggttcattcaataaatgatgtatgtg 7428954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 28882807 - 28882730
Alignment:
Q  328 caccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatata 405  Q
    |||| ||||||||||||||||||||||| |  |  ||| || || |||||||||||||  ||||||||||||||||||    
T  28882807 caccctccggtcactattataagcaaaaatcaaccttttaggtttattcaataaatgatatatgtggtctattatata 28882730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 36307999 - 36308056
Alignment:
Q  338 tcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    ||||||||||||  ||||||| |||||| || |||||||||||||||| |||||||||    
T  36307999 tcactattataaataaaagttgattttttaggttcattcaataaatgatgtatgtggt 36308056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 7377549 - 7377617
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtgg 394  Q
    |||||||||||||||||  ||||||||||| |||| |||| || | |||||||| ||||| ||||||||    
T  7377549 tacaccatccggtcactggtataagcaaaaattcactttttagatacattcaattaatgatgtatgtgg 7377617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 10117115 - 10117051
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    |||||||||||||||||||||||||||||| || |  ||| || |||||||||| ||||| ||||    
T  10117115 tacaccatccggtcactattataagcaaaaatttacattttagattcattcaattaatgatgtat 10117051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 10934748 - 10934676
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtcta 398  Q
    |||||| ||||||||||||||||||||||| |  |  ||| || |||||||| ||||||| ||||||||||||    
T  10934748 tacaccctccggtcactattataagcaaaaatcaacattttagattcattcattaaatgatgtatgtggtcta 10934676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 397
Target Start/End: Complemental strand, 40098906 - 40098834
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  40098906 atacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 40098834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 9056166 - 9056095
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| ||||||||||| ||||||||||| |||| |||| || | |||| ||| ||||| |||||||||||    
T  9056166 tacaccctccggtcactaatataagcaaaaattcactttttagatacatttaattaatgatgtatgtggtct 9056095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 14381233 - 14381304
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||| ||||||||||| ||||||||||| | || |||| || | |||||||| ||||| |||||||||||    
T  14381233 tacaccctccggtcactaatataagcaaaaatccactttttagatacattcaattaatgatgtatgtggtct 14381304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 24419007 - 24418952
Alignment:
Q  344 ttataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||||||||| |||| |||| || |||||||||||||||| |||||| ||||||    
T  24419007 ttataagcaaaaattcactttttagattcattcaataaatgatgtatgtcgtctat 24418952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 41387907 - 41387836
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||||||||||||||||||||||    || ||| || |||||||| ||||| | |||||||||||    
T  41387907 tacaccatccggtcactattataagcaaaaaactatattttagattcattcattaaataatgtatgtggtct 41387836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 400
Target Start/End: Complemental strand, 15037899 - 15037821
Alignment:
Q  323 gcatacaccatccggtcactattataagcaaaagttca-tttttcagtttcattcaataaatgaagtatgtggtctatt 400  Q
    ||||||| | |||||||||||||||||| |||| || | ||||| || |||||||||||||||| || ||||| |||||    
T  15037899 gcatacatcctccggtcactattataagtaaaattttatttttttaggttcattcaataaatgatgtgtgtggcctatt 15037821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 18018240 - 18018314
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| || ||| ||| |||||||||||| ||||||||| || |||||||| ||||||   ||||||||||||    
T  18018240 atacaccctctggttactgttataagcaaaaattcattttttaggttcattcattaaatgttatatgtggtctat 18018314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 24287779 - 24287853
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||| ||||||||||||||||||||||| ||    ||| || |||||||| ||||||| |||| ||||||||    
T  24287779 atacaccctccggtcactattataagcaaaactttgcattttagattcattcattaaatgatgtatatggtctat 24287853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 35781233 - 35781295
Alignment:
Q  337 gtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||| ||||| || |||||| || ||||||||||||||||  |||| |||||||    
T  35781233 gtcactattataaacaaaattttattttttaggttcattcaataaatgatatatgaggtctat 35781295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 42749057 - 42749123
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||| ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||||    
T  42749057 tccggtcactaatataagcaaaagtttgatttttagattcattcattaaatgatgtatgtagtctat 42749123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 2627176 - 2627249
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctattatatag 406  Q
    |||||||||||||||||||| ||| | | |||| || |||||||||||||| | |||| ||||| || ||||||    
T  2627176 tccggtcactattataagcataagataactttttagattcattcaataaataatgtatttggtcaataatatag 2627249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 24053592 - 24053665
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| ||||||||||| |||||||||||  | || ||| || |||||||| | ||||| |||||||||||||    
T  24053592 tacaccctccggtcactaatataagcaaaaaattatattttaggttcattcatttaatgatgtatgtggtctat 24053665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 26014574 - 26014635
Alignment:
Q  336 ggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    |||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||||||    
T  26014574 ggtcactaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtggtct 26014635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 33070160 - 33070233
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    |||||| |||||||||| |||||||||||| ||  | ||| || |||||||| ||||||| |||||| ||||||    
T  33070160 tacaccctccggtcactgttataagcaaaactttgtattttagattcattcattaaatgatgtatgtagtctat 33070233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 405
Target Start/End: Complemental strand, 2345825 - 2345781
Alignment:
Q  361 tttttcagtttcattcaataaatgaagtatgtggtctattatata 405  Q
    ||||| ||||||||||||||||| | ||||||||||||| |||||    
T  2345825 tttttaagtttcattcaataaataatgtatgtggtctataatata 2345781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 393
Target Start/End: Original strand, 6260611 - 6260671
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||||| ||||||||||||||||| | |||| || || ||| ||||||||| |||||||    
T  6260611 tccggtcattattataagcaaaagttgaatttttaggtttatttaataaatgatgtatgtg 6260671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 354
Target Start/End: Complemental strand, 7410710 - 7410682
Alignment:
Q  326 tacaccatccggtcactattataagcaaa 354  Q
    |||||||||||||||||||||||||||||    
T  7410710 tacaccatccggtcactattataagcaaa 7410682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 9056015 - 9056083
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||| | ||||||||||| |||| |||| || | |||||||| ||||| |||||||    
T  9056015 atacaccctccggtcacaaatataagcaaaaattcactttttagatacattcaattaatgatgtatgtg 9056083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 13841847 - 13841907
Alignment:
Q  330 ccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtat 390  Q
    |||| ||||||||||||||||||||| || | |||| |  |||||||||||||||| ||||    
T  13841847 ccattcggtcactattataagcaaaaatttactttttaaattcattcaataaatgatgtat 13841907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 17087357 - 17087421
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtct 397  Q
    ||||||||||| ||||||||||||||   |||| || |||||||| ||||||| |||||| ||||    
T  17087357 tccggtcactaatataagcaaaagtttgatttttagattcattcattaaatgacgtatgtagtct 17087421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 28939568 - 28939512
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataa 381  Q
    |||||||||||| | |||||||||||||||| ||||| ||| || |||||| |||||    
T  28939568 atacaccatccgataactattataagcaaaaattcatattttaggttcatttaataa 28939512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 36698776 - 36698716
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatga 385  Q
    ||||| ||| |||||||||||||||||| || ||||||| |  | ||||||||||||||||    
T  36698776 atacatcatacggtcactattataagcataaattcatttgttggattcattcaataaatga 36698716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 393
Target Start/End: Complemental strand, 37509073 - 37509013
Alignment:
Q  333 tccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    |||||| ||||||||||| ||||||| |||||| |  |||||| ||||||||| |||||||    
T  37509073 tccggttactattataagtaaaagttgattttttaacttcatttaataaatgatgtatgtg 37509013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 120139 - 120209
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggt 395  Q
    ||||||| ||||||||||| ||||||||||| |||| |||| || | |||||||| ||||| |||||||||    
T  120139 atacaccctccggtcactaatataagcaaaatttcactttttagatacattcaattaatgatgtatgtggt 120209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 120291 - 120223
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||||| ||||||||||| || | |||| || | |||||||| ||||| |||||||    
T  120291 atacaccctccggtcactaatataagcaaaaatttactttttagatacattcaattaatgatgtatgtg 120223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 21252 - 21193
Alignment:
Q  340 actattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtctat 399  Q
    ||||||||||||||| ||||| |||| || |||||| |||||||||  ||||||||||||    
T  21252 actattataagcaaatgttcactttttagattcatttaataaatgatatatgtggtctat 21193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 54533 - 54463
Alignment:
Q  326 tacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtggtc 396  Q
    ||||||||||| |||||| ||||||||||| |||| | || || | |||||||| ||||| ||||||||||    
T  54533 tacaccatccgatcactaatataagcaaaaattcactctttagatacattcaattaatgatgtatgtggtc 54463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 61157 - 61225
Alignment:
Q  325 atacaccatccggtcactattataagcaaaagttcatttttcagtttcattcaataaatgaagtatgtg 393  Q
    ||||||| ||||||||||| ||||||||||| | | ||||| || | |||||||| ||||| |||||||    
T  61157 atacaccctccggtcactaatataagcaaaaatcccttttttagatacattcaattaatgatgtatgtg 61225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 5927 times since January 2019
Visitors: 5761