View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0791-INSERTION-1 (Length: 712)
Name: NF0791-INSERTION-1
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-1 |
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Alignment Details
Target: chr8 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 8 - 711
Target Start/End: Complemental strand, 41785612 - 41784909
Alignment:
| Q |
8 |
ctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgctttt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785612 |
ctttaagccttcttagttcctcttcataaatagaaactttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgctttt |
41785513 |
T |
|
| Q |
108 |
gttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatattgtcttccattttcttcctcaacttttctgccaattcttccatt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785512 |
gttctcattgttcaattgttctgctacgtggatcctctggtgcaacaagcggatattgtcttccattttcttcctcaacttttctgccaattcttccatt |
41785413 |
T |
|
| Q |
208 |
ttcatttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcct |
307 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41785412 |
ttcctttctgtcgatcgctgattcaacataagtttattcgaggtgattatggtttgtttttgctccgcatttattcggtcaatggttgatgtctgatcct |
41785313 |
T |
|
| Q |
308 |
ttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcatt |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785312 |
ttatagttttctcttgatcagctatctggcctgtcaactttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcatt |
41785213 |
T |
|
| Q |
408 |
ctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctcca |
507 |
Q |
| |
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| T |
41785212 |
ctggagttccaacttggttttatgttcctgcaaattgtccaacgctagcctcatgtcattaacttcagcttttaaagccataatctcaattgaagctcca |
41785113 |
T |
|
| Q |
508 |
ttttcatcgctatcgttttcctttaaaaaatttgatatctcttcgcctctttgtatcattgctgctttcagttcatggtttctatcctgcagggccttat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785112 |
ttttcatcgctatcgttttcctttaaaaaatttgatatctcttcacctctttgtatcattgctgctttcagttcatggtttctatcctgcagggccttat |
41785013 |
T |
|
| Q |
608 |
tttcattcatcagtggtttaatctcataaatttgtatctctt-actgctcttccaactcaattcactgattggatttgag-ttccaattcaagttccagg |
705 |
Q |
| |
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|||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||| | |
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| T |
41785012 |
tttcattcatcagttgtttaatctcat-aatttgtatctcttaactgctcttccaactcatttctctgatt-gatttgagtttccaattcgagttccatg |
41784915 |
T |
|
| Q |
706 |
ttcttt |
711 |
Q |
| |
|
|||||| |
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|
| T |
41784914 |
ttcttt |
41784909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 45 - 525
Target Start/End: Complemental strand, 10834795 - 10834316
Alignment:
| Q |
45 |
tttctccccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctc |
144 |
Q |
| |
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|||||| || |||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||||| |||||||||| |||||||| | ||||||||| |
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| T |
10834795 |
tttctctcccagaatcttgttctcttgctcataccttaactttgttaatttgcaactgtttttgttttcattgttcagctgttctgccaaatggatcctc |
10834696 |
T |
|
| Q |
145 |
tggtgcaacaag-cggatattgtcttccattttcttcctcaacttttctgccaattcttccattttcatttctgtcgatcgctgattcaacataagttta |
243 |
Q |
| |
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| |||||||||| | ||||||| ||||||| ||| || || | | |||||||||||||||||||| |||||| | || | |||||||| | | ||| |
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| T |
10834695 |
tagtgcaacaagccctatattgttttccattctctatctaaaatctcctgccaattcttccattttcctttctgccagtcaccgattcaacctgaactta |
10834596 |
T |
|
| Q |
244 |
ttcgaggtgattatggtttgtttttgctccgcatttattcggtcaattgttgatgtctgatcctttatagttttctcttgatcagctatctggcctgtca |
343 |
Q |
| |
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|| || ||||||||||||||||||| ||| |||||||| ||||||| |||| || |||||| |||||||| |||| ||||||||||||||| || | |
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| T |
10834595 |
tttgacatgattatggtttgtttttggtccacatttatttggtcaatggttggtgcttgatccattatagttatctc-tgatcagctatctgggttgcaa |
10834497 |
T |
|
| Q |
344 |
actttgtgttcaaagtttctatctttgctaagctttctgcatattccttctggtttcgctcattctggagttccaacttggttttatgttcctgcaaatt |
443 |
Q |
| |
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|||||||| | ||| |||| | |||||| | |||||| ||||| | |||||||||||||||||| ||| || |||||| ||||| |||| ||||| || |
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| T |
10834496 |
actttgtggttaaattttccacctttgccaggctttcagcatactgcttctggtttcgctcatttgagagctcgaacttgatttta-gttcatgcaagtt |
10834398 |
T |
|
| Q |
444 |
gtccaacgctagcctcatgtcattaacttcagcttttaaagccatgatctccattgaagctccattttcatcgctatcgttt |
525 |
Q |
| |
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|| || |||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
10834397 |
atcgaaatctagtcccatgtcattaacttcagcttttaaagccatgatctccatcgaagctccattttcgtcgctatcgttt |
10834316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 178
Target Start/End: Original strand, 2281450 - 2281576
Alignment:
| Q |
52 |
ccaagaatcttgttctcttcctcgtaccttatctttgttaatttgcaactgcttttgttctcattgttcaattgttctgctacgtggatcctctggtgca |
151 |
Q |
| |
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||||| || |||||||||||||| ||| || |||||| |||||| ||||| |||||| || || |||| |||||||||||||||||||||| | |||| |
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| T |
2281450 |
ccaagcattttgttctcttcctcatacttttgctttgtcaatttgtaactgtgtttgttttcgttattcagttgttctgctacgtggatcctccgatgca |
2281549 |
T |
|
| Q |
152 |
acaagcggatattgtcttccattttct |
178 |
Q |
| |
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| | | ||||| ||||||||||||| |
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| T |
2281550 |
atatatgtatattatcttccattttct |
2281576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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