View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791-INSERTION-10 (Length: 321)
Name: NF0791-INSERTION-10
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-10 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 1248988 - 1248675
Alignment:
| Q |
8 |
aggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgatgaggtcatcagcaccg |
107 |
Q |
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| T |
1248988 |
aggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtggggggatcgtaccgacgaggtcatcagcaccg |
1248889 |
T |
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| Q |
108 |
tcgatctcgaggaagttgacacggtagattgtggtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtttttggagtccaggttg |
207 |
Q |
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| T |
1248888 |
tcgatctcgaggaagttgacacggtagattgttgtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtttttggagtccaggttg |
1248789 |
T |
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| Q |
208 |
araagaggcttgtattgtggaaatggtctttgattttgaggaggactttttcatcgtcggggtggcagtggtgtcggcgtggcggtggagaaagagagaa |
307 |
Q |
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| T |
1248788 |
agaagaggcttgtattgtggaaatggtctttgattttgaggaggactttttcgtcgtcggggtggcagtggtgtcggcgtggtggtggagaaagagagaa |
1248689 |
T |
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| Q |
308 |
ggttaaggagggga |
321 |
Q |
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| T |
1248688 |
ggttaaggagggga |
1248675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 12079638 - 12079951
Alignment:
| Q |
8 |
aggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgatgaggtcatcagcaccg |
107 |
Q |
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| T |
12079638 |
aggacctgttaggttaggtaggaggcgtaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcggtattgtaccgacaagatcatcagcacca |
12079737 |
T |
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| Q |
108 |
tcgatctcgaggaagttgacacggtagattgtggtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtttttggagtccaggttg |
207 |
Q |
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| T |
12079738 |
tctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtgtgggatccaggttg |
12079837 |
T |
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| Q |
208 |
araagaggcttgtattgtggaaatggtctttgattttgaggaggactttttcatcgtcggggtggcagtggtgtcggcgtggcggtggagaaagagagaa |
307 |
Q |
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| T |
12079838 |
agaagaggcttgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcagaggcgtgggcgtggtggtggagaaagagagaa |
12079937 |
T |
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| Q |
308 |
ggttaaggagggga |
321 |
Q |
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| T |
12079938 |
ggttaaggaaggga |
12079951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 8 - 321
Target Start/End: Original strand, 12096278 - 12096594
Alignment:
| Q |
8 |
aggaccggtgaggttagggaggttgcggaatatgagggtctccaggtatggtaggtcagcaatgagtgggggtatcgtaccgatgaggtcatcagcaccg |
107 |
Q |
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| T |
12096278 |
aggacctgttaggttagggaggaggcgaaaaatgagggtctcgaggtaaggtagatcggcgatgagtggcgggattgtaccgacaagatcatcagcgcca |
12096377 |
T |
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| Q |
108 |
tcgatctcgaggaagttgacacggtagattgtggtttttgggattttcttgcataagactatgcgccatttgcaacaatctgtttttggagtccaggttg |
207 |
Q |
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| T |
12096378 |
tctatctcaaggaagttgacacgatggatggttgtttttgggattttcttgcatgagactatacgccatttgcaacagtctgtgtgtgggatccaggttg |
12096477 |
T |
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| Q |
208 |
araagaggcttgtattgtggaaatggtctttgattttgaggaggactttttcatcgtcggggtggcagtggtgtcggcgtggcggtggagaa---agaga |
304 |
Q |
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| T |
12096478 |
agaagaggcttgtattgtggaagtaatctttgatcttgaggaggactttttcgtcgtctgggtggcagaggtttgggcgtggtggtgaagaaattagaga |
12096577 |
T |
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| Q |
305 |
gaaggttaaggagggga |
321 |
Q |
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||| |||||||| |||| |
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| T |
12096578 |
gaaagttaaggaaggga |
12096594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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