View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0791-INSERTION-11 (Length: 741)
Name: NF0791-INSERTION-11
Description: NF0791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0791-INSERTION-11 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 685; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Complemental strand, 32427019 - 32426279
Alignment:
| Q |
8 |
gtattggcaactctcatggaaatccgagtggggacgaatgccctgaatgtctcc---ggggatatgtctgtgaagtgaacatacacaaaa-ttatatatg |
103 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32427019 |
gtattggcaactctcatggaaatccgagtggggatgaatgccctgaatgtctccaacggggatatgtctgtgaagtgaacatacacaaaaattatatatg |
32426920 |
T |
|
| Q |
104 |
tatgtataatcatgattcacgaa---caatttacaagttcattcataacctgagaatttgtgtgcattgtgctagatatcctgaatgttgaattggtgtg |
200 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32426919 |
tatgtataatcatgattcatgaagaacaatttacaagttcattcataacctgagaatttgtgtgcattgtgttagatatcctgaatgttgaattggtgtg |
32426820 |
T |
|
| Q |
201 |
aattcatggtatacaagttcattcataacctgataatttgtttgtatcatgttacatatctttgtattgaatgctgaatgggcgtgaattcaaggcattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32426819 |
aattcatggtatacaagttcattcataacctgataatttgtttgtatcatgttacatatctttgtattgaatgctgaatgggtgtgaattcaaggcattg |
32426720 |
T |
|
| Q |
301 |
ccattgttggacttaatgaatgtgaaattatttccttatctgtcttttatcttatgtatctatttgcattgttataggggccggagattcgaaccggatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426719 |
ccattgttggacttaatgaatgtgaaattatttccttatctgtcttttatcttatgtatctatttgcattgttataggggccggagattcgaaccggatt |
32426620 |
T |
|
| Q |
401 |
tctcaaggatggaaagcctgtccaactgaaacaaggtcaggaaataaccatttcaaccgactatgacataaaaggagatgagaatatgatctgtatgagc |
500 |
Q |
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| T |
32426619 |
tctcaaggatggaaagcctgtccaactgaaacaaggtcaggaaataaccatttcaaccgactatgacataaaaggagatgagaatatgatctgtatgagc |
32426520 |
T |
|
| Q |
501 |
tacaaaaagttggcttatgatgtgaagcccggaagcattgtattatgcgcagatggcaccatatcatttaaagttttatcatgtgacaaaaaagctggtt |
600 |
Q |
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| T |
32426519 |
tacaaaaagttggcttatgacgtgaagcccggaagcattgtattatgcgcagatggcaccatatcatttaaagttttatcatgtgacaaaaaagctggtt |
32426420 |
T |
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| Q |
601 |
tggttcgatgctgctgtgaaaactctgccatgcttggcgaaagaaagaatgttaatcttcctggagtcatagtggatctcccaacattgactgagaaaga |
700 |
Q |
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| T |
32426419 |
tggttcgatgctgctgtgaaaactctgccatgcttggcgaaagaaagaatgttaatcttcctggagtcatagtggatctcccaacattgactgagaaaga |
32426320 |
T |
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| Q |
701 |
caaggaagatatcatggtatggggagttcctaataatattg |
741 |
Q |
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| T |
32426319 |
caaggaagatatcatggtatggggagttcctaataatattg |
32426279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 376 - 741
Target Start/End: Complemental strand, 32420381 - 32420013
Alignment:
| Q |
376 |
aggggccggagattcgaaccggatttctcaaggatggaaagcctgtccaactgaaacaa-ggtcaggaaataaccatttcaaccgactatgacataaaag |
474 |
Q |
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||||||| ||||||||||| |||||||||||||| | || ||| | |||||||||||| ||| | |||||||| |||||||| |||||| | |||| | |
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| T |
32420381 |
aggggcctgagattcgaactggatttctcaaggacgccaaacctatacaactgaaacaaaggtaatgaaataactatttcaactgactatagcctaaagg |
32420282 |
T |
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| Q |
475 |
gagatgagaatatgatctgtatgagctac--aaaaagttggcttatgatgtgaagcccggaagcattgtattatgcgcagatggcaccatatcatttaaa |
572 |
Q |
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| T |
32420281 |
gtgatgagaatacaatcagcatgagctaacaaaaaagttggctcatgatgtgaagcccgggagtgtcatactctgcgcagatggaaccatatcatttaca |
32420182 |
T |
|
| Q |
573 |
gttttatcatgtgacaaaaaagctggtttggttcgatgctgctgtgaaaactctgccatgcttggcgaaagaaagaatgttaatcttcctggagtcatag |
672 |
Q |
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|| ||||||||||||||| || |||||||||||| | ||||||| |||||||| | || ||||| ||||||||||||||||| |||||||| ||| |
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| T |
32420181 |
gtcttatcatgtgacaaagaattgggtttggttcgagtccgctgtgagaactctgctgttctaggcgagagaaagaatgttaatctgcctggagttgtag |
32420082 |
T |
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| Q |
673 |
tggatctcccaacattgactgagaaagacaaggaagatatcatggtatggggagttcctaataatattg |
741 |
Q |
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| T |
32420081 |
tggatcttcccactttgactgagaaagacaaggaagatatcatggcttggggagttcccaataaaattg |
32420013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 367 - 741
Target Start/End: Complemental strand, 40597539 - 40597165
Alignment:
| Q |
367 |
cattgttataggggccggagattcgaaccggatttctcaaggatggaaagcctgtccaactgaaacaaggtcaggaaataaccatttcaaccgactatga |
466 |
Q |
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||||||| |||||||| |||||||| || ||||||||||||||||| || ||| ||||||||||||||||| | |||||||| ||||| ||||||||| |
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| T |
40597539 |
cattgttgtaggggcctgagattcgtactggatttctcaaggatggcaaacctatccaactgaaacaaggtaatgaaataactatttcgaccgactatag |
40597440 |
T |
|
| Q |
467 |
cataaaaggagatgagaatatgatctgtatgagctacaaaaagttggcttatgatgtgaagcccggaagcattgtattatgcgcagatggcaccatatca |
566 |
Q |
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| |||| || |||||||||| |||||| ||||||||||||||||||||| | |||||||||||||| || | || | ||||||||||| ||||||||| |
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| T |
40597439 |
cctaaagggtgatgagaatacgatctgcatgagctacaaaaagttggctgaggatgtgaagcccgggagtgtcatactctgcgcagatggaaccatatca |
40597340 |
T |
|
| Q |
567 |
tttaaagttttatcatgtgacaaaaaagctggtttggttcgatgctgctgtgaaaactctgccatgcttggcgaaagaaagaatgttaatcttcctggag |
666 |
Q |
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|||| ||||||||||||||||||| || |||||||||||| | ||||||| |||||||| | || ||||| ||||||||||||||||| ||||||| |
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| T |
40597339 |
tttacagttttatcatgtgacaaagaattgggtttggttcgagtccgctgtgagaactctgctgttctaggcgagagaaagaatgttaatctgcctggag |
40597240 |
T |
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| Q |
667 |
tcatagtggatctcccaacattgactgagaaagacaaggaagatatcatggtatggggagttcctaataatattg |
741 |
Q |
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| |||||||||| || || |||||||||||||||| ||||||||| ||||| ||||| ||||| ||||| |||| |
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| T |
40597239 |
ttgtagtggatcttcccactttgactgagaaagacagggaagatattatggtttggggtgttcccaataaaattg |
40597165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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